Pairwise Alignments

Query, 526 a.a., putative Opine ABC transporter, periplasmic binding protein from Pseudomonas putida KT2440

Subject, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  130 bits (327), Expect = 1e-34
 Identities = 133/519 (25%), Positives = 220/519 (42%), Gaps = 34/519 (6%)

Query: 7   TLRSSALAALVTLSGISPLALAQDSARATISVSPGIADITSLDPHRASLVGDKGIVAEMF 66
           T+++    AL+  +G+S  A+A D    T++     AD  S+DPH     G   +   +F
Sbjct: 3   TMKNKLALALIA-AGLSFGAMAAD---ITVAYD---ADPVSMDPHEQLSGGTLQLSHMVF 55

Query: 67  NALVRFPPGSSDPAALEADLAERWESSDDKKVWTFFLRKGVMFHGGYGELKAADVVYSLQ 126
           + L+RF    +     E  LAE W+  D++ +  F LRKGV FH G  +  A DVV++  
Sbjct: 56  DPLIRF----TQKMEFEPRLAESWQRVDNETM-RFTLRKGVKFHSG-NDFTADDVVWTFN 109

Query: 127 RAADPKRSSFSANFTALEKVEALDDYTVKVTLK--YP-----DTAFLGRVSNYHGGQIV- 178
           R  +   + F   F  L  +  +DDYT+++     YP      T      S ++ G    
Sbjct: 110 RLKES--ADFKGIFEPLVSLTKVDDYTIEIKTAGTYPLIENVATYIFPMDSKFYTGTTAD 167

Query: 179 --SKAAAEKLGERYGQAPI-GTGPFAFSEHITQQYVKLVANDQYF--RGKPKLGAIVYRM 233
             +KA   K G  +    I GTGPF  +       ++   N  Y+    K  +  +   +
Sbjct: 168 GKNKAEIVKHGNSFASENISGTGPFTVTAREQGVKLEFQRNPNYWDKASKGNVDKLTLAV 227

Query: 234 IPSDSARELAFASDELDLMLGKREQRWVERSRARGVNVDVFEPAEFRTLFLNRNIKP-LD 292
           I  D+ R  A  S  +D++       +     A+GV++         T  +N+N  P L 
Sbjct: 228 IKEDATRVAALLSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVITFQMNQNSNPALK 287

Query: 293 DVKVRQAIAASVNINEIIRYAGKDVADGGCSIIPNGYQGLDCSAGPYAYDPAHAKALLAS 352
           DV+VRQAI  ++N   I+    K  A       P GY G + +  P  +D   AK L+  
Sbjct: 288 DVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGYNENLKP-RFDLNKAKELMKE 346

Query: 353 AGYPNGLKLKSVVSN--AAPQLPIMEIIQAQLAKAGITLEMEVVDHATYQAKSRQDQSAI 410
           AGY  G  L  +  N        I +   A L+K GI ++++ +  A Y  +  +  + +
Sbjct: 347 AGYEKGFNLTMIAPNNRYVNDEKIAQAASAMLSKIGIKVDLKTMPKAQYWPEFDKCAADM 406

Query: 411 VFYGAARYPGADYWLTEFYDSASAIGAPAAMSNFGHCSVA--DDAIRKARVEADPQTQLD 468
           +  G           TEF              N G+ S A  D  +  A  E D + +  
Sbjct: 407 LMIGWHPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDKLVNAANEETDLEKRST 466

Query: 469 LWKKAQVQIHDDVCAIPLFGLKQVWAKAASVDYGYVLHG 507
           + KK +  ++++   +PL      WA   ++D   +++G
Sbjct: 467 MLKKVEEILYNEAAFVPLHFQDPSWAAKNTLDIAPIING 505