Pairwise Alignments

Query, 526 a.a., putative Opine ABC transporter, periplasmic binding protein from Pseudomonas putida KT2440

Subject, 526 a.a., peptide-binding periplasmic ABC transporter protein from Sinorhizobium meliloti 1021

 Score =  129 bits (324), Expect = 3e-34
 Identities = 145/523 (27%), Positives = 217/523 (41%), Gaps = 53/523 (10%)

Query: 11  SALAALVTLSGISPLALAQDSARATISVSPGIADITSLDPHRASLVGDKGIVAEMFNALV 70
           SALAA    + I+  ALA  ++ AT+      ADI SLDP       +   +  ++  L+
Sbjct: 10  SALAA----AAIAAPALATSASAATLRWGSR-ADIYSLDPDSVPSTSNLAFLNHIYEGLI 64

Query: 71  RFPPGSSDPAALEADLAERWESSDDKKVWTFFLRKGVMFHGGYGELKAADVVYSLQRAAD 130
           R+ P       +E  LA  W+  D K  W F LRKGV FH G  +  A DVV S+ R +D
Sbjct: 65  RYGPNFE----IEPALATEWKLIDSKH-WRFTLRKGVKFHDG-ADFTADDVVASMNRVSD 118

Query: 131 PKRSSFSANFTALEKVEALDDYTVKVTLKYPDTAFLGRVSNYHGGQIVSKAAAEKLGERY 190
           P  S    N      V+ +DD+TV + +  P   FL  +SN      +   +A+ L +  
Sbjct: 119 P-TSPLRGNIPLYVGVKKVDDFTVDIEVSAPSALFLNDMSN------IFMFSAKWLKDNN 171

Query: 191 GQAPI---------------GTGPFAFSEHITQQYVKLVANDQYF-RGKPKLGAIVYRMI 234
            + P                GTGPF     +      L+ NDQ++ + K  L  I Y  I
Sbjct: 172 AEKPTDIASNTENYATHNTNGTGPFKLESRVPDSKTVLLVNDQWWDQKKHNLDRIEYIPI 231

Query: 235 PSDSARELAFASDELDLMLGKREQRWVERSRARGVNVDVFEPAEFRTLFLNRNIK----- 289
            S + R  A  S E+DL+     Q       + G+ V   +  E RT+F+  N K     
Sbjct: 232 SSAATRVAALLSSEIDLLDSAPIQDLPRLESSPGITVS--KRTELRTVFIGFNGKEKLED 289

Query: 290 ----PLDDVKVRQAIAASVNINEIIRYAGKDVADGGCSIIPNGYQGLDCSAGPY-AYDPA 344
               P  D++VRQA+ AS++ + I +   + +A    S+I     G   S   Y   D  
Sbjct: 290 GRPNPFLDLRVRQAVEASIDRDLINKKIMRGLARPSGSLIAPEIAGYAKSLDTYQPADSK 349

Query: 345 HAKALLASAGYPN-GLKLKSVVSNAAPQLPIMEIIQAQLAKAGITLEMEVVDHATYQAKS 403
            A+ LL  AG  +       +   +  +  I   I   L +AG    +++   A  Q K 
Sbjct: 350 LAQKLLEDAGQKDLAFTYLCMNDESINEEDICSGIANMLKRAGFQPTIDMGPRAVQQPKR 409

Query: 404 RQDQSAIVFYGAARYPGADYWLTEFYDSASAIGAPAAMSNFGHCSV--ADDAIRKARVEA 461
              ++ +     A  P  D + +      S       +SN+G  S    DD ++KA  E 
Sbjct: 410 TNGKADMFNLSWANEPTLDAY-SLLSQVLSTRSGSTGVSNYGGWSYPELDDLVKKAAQEP 468

Query: 462 DPQTQLDLWKKAQVQIHDDVCAIPLFGLKQVWA---KAASVDY 501
           D   +L L ++A     D    IPL      W    K  SVD+
Sbjct: 469 DTAKRLALEEQALKIAKDKAILIPLHQQPIAWGMLDKVKSVDF 511