Pairwise Alignments

Query, 373 a.a., putative Group II intron-encoding maturase from Pseudomonas putida KT2440

Subject, 505 a.a., reverse transcriptase from Sinorhizobium meliloti 1021

 Score =  128 bits (322), Expect = 3e-34
 Identities = 102/330 (30%), Positives = 157/330 (47%), Gaps = 35/330 (10%)

Query: 3   YRATPSRRVYIPKAD--GRQRPLGIASLEDKIVQQAVVTVLNAIYEEDFLGFSYGFRPGR 60
           YR +P+RR  IPKA   G+ RPLGI ++ D++VQ A   +L  I+E  F   SYGFRPGR
Sbjct: 91  YRPSPARRKLIPKAGKPGQFRPLGIPTIRDRVVQGAAKILLEPIFEAQFWHVSYGFRPGR 150

Query: 61  SQHDALDALTVALKGQKVN-----------WILDADITSFFDEIDHEWMLMFLGHRIADR 109
           + H AL+ +  A   QK +           W+++ DI   FD I+H  +L  +  RI DR
Sbjct: 151 NTHGALEYIRRAALPQKRDEDTRRNRLPYPWVIEGDIKGCFDNINHHHLLERMRKRIGDR 210

Query: 110 RLLGLICKWLQAGVMEDGRRVVATKGTPQGAVISPLLANIYLHYVLDLWAR------QWR 163
           R++ L+  +L+AGV+ + + +    GTPQG +ISPLLANI L  + + + R      + +
Sbjct: 211 RVVRLVGLFLKAGVLTEDQFLRTDAGTPQGGIISPLLANIALSAIEERYERWTYHRKKTQ 270

Query: 164 QRHARGDVIIVRYADDS--VVG---FRTKVQAQQFLVQLQERLARFGLSLNASKTRLIEF 218
            R     V     A DS  + G   +     A  F+V +   L       +A    LI+ 
Sbjct: 271 ARRKSNGVAAAASARDSDRIAGRCVYLPVRYADDFVVLVSGSLEEAMAEKSALADYLIKT 330

Query: 219 GRFAARNRRKRGLGKPETFDFLGFTHCCSTNRSGGFQILRLTVKKRMRAML------LAM 272
                   + +     E F+FLGF      ++  G+   R+ + K   A L      L  
Sbjct: 331 TGLTLLPEKTKVTAMTEGFEFLGFRFSVHWDKRYGYG-PRVEIPKAKAANLRHKVKQLTQ 389

Query: 273 RDELKHRRHEPIWVQGQWLTRVVSGYFNYH 302
           RD +     E +    + +  + SG+ NY+
Sbjct: 390 RDSISVSLGEKL----RGVNAITSGWANYY 415