Pairwise Alignments

Query, 373 a.a., putative Group II intron-encoding maturase from Pseudomonas putida KT2440

Subject, 430 a.a., reverse transcriptase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  143 bits (361), Expect = 8e-39
 Identities = 88/234 (37%), Positives = 126/234 (53%), Gaps = 13/234 (5%)

Query: 11  VYIPKADGRQRPLGIASLEDKIVQQAVVTVLNAIYEEDFLGFSYGFRPGRSQHDALDALT 70
           V IPK+ G +RPLGI ++ D++ Q AVV ++    E  F   SY +RP RS HDA+    
Sbjct: 68  VEIPKSTGGKRPLGIPTVSDRVAQMAVVMLITPSIEPCFHEDSYAYRPHRSAHDAVG--K 125

Query: 71  VALKGQKVNWILDADITSFFDEIDHEWMLMFLGHRIADRRLLGLICKWLQAGV-MEDGRR 129
              +  K  W+LD DI+ FFD IDHE +L  L     ++ +L  I +WL+      DG +
Sbjct: 126 ARERCWKYAWVLDMDISKFFDTIDHELLLKALKRHTQEKWVLMYIERWLKVPYEKSDGSQ 185

Query: 130 VVATKGTPQGAVISPLLANIYLHYVLDLWARQWRQRHARGDVIIVRYADDSVVGFRTKVQ 189
           V    G PQG+VI P+LAN++LHY  D W  +   R     V   RYADD++    +  Q
Sbjct: 186 VDRALGVPQGSVIGPVLANLFLHYTFDKWMEKNFPR-----VPFERYADDTICHCHSLKQ 240

Query: 190 AQQFLVQLQERLARFGLSLNASKTRLIEFGRFAARNRRKRGLGKPETFDFLGFT 243
           A+     +Q+R     L LN  KT+++       ++ R++      TFDFLGFT
Sbjct: 241 AEYMQAMIQQRFECCRLRLNEEKTKIV-----YCKSSRQKECYPNVTFDFLGFT 289