Pairwise Alignments

Query, 269 a.a., transposase from Pseudomonas putida KT2440

Subject, 269 a.a., ISSod1, transposase OrfB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  198 bits (503), Expect = 1e-55
 Identities = 111/270 (41%), Positives = 159/270 (58%), Gaps = 9/270 (3%)

Query: 4   VTRSSYYA-HRHRRRTPDVERLRLRSRVNELFARGRSAPGSRSVKAMMQEEGEQIGRFKV 62
           V++S YY  H+       VE L+L   V +LF + R + G+R +   +++EG Q+GR+ V
Sbjct: 3   VSKSGYYDWHKRPANVISVETLKLYRLVRQLFKQSRGSLGNREMVKKLRKEGYQVGRYLV 62

Query: 63  RSLMRELALVSKQPGAYAYKKATVERPD----IPNILNRAFDVEAPNQVWCGDITYIWAQ 118
           R +M  L L + Q  AY   K T +R        N+LN  F+  + NQVW GD+TY+   
Sbjct: 63  RKIMHRLRLKATQRCAY---KVTTQRKHSDAVADNLLNMNFNPVSANQVWAGDVTYLKTG 119

Query: 119 GKWHYLAVVLDLYARRVVGWALSEKPDADLVVKALDVAYEQRGKPQGLLFHSDQGSQYGS 178
             W YLAVV+DLY+RR+VGW + ++   DL+ KAL  AY  R   +GL+FHSD+GSQY S
Sbjct: 120 EGWMYLAVVMDLYSRRIVGWRIDKRMTTDLISKALIKAYNLRQPARGLVFHSDRGSQYTS 179

Query: 179 RQFRQRLWRYRMRQSMSRRGNCWDNAPMERVFRSLKSEWIPTTGYLTGQQAQRDISQYLM 238
           +QF + L  Y +R SM   G CWDNA +ER F SLK +WI      T +  ++D++ Y+ 
Sbjct: 180 KQFGRLLSSYGIRASMGDVGACWDNAVVERFFGSLKHDWIFKVAQPTREFMKQDVTAYI- 238

Query: 239 RHYNWIRPHQFNNGLAPAKAEEKLKTVSGM 268
           ++YN  R H  NN L+P + E     VS +
Sbjct: 239 KYYNLERLHSANNDLSPVEFENSQVKVSSL 268