Pairwise Alignments

Query, 332 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 344 a.a., GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  119 bits (298), Expect = 1e-31
 Identities = 79/201 (39%), Positives = 113/201 (56%), Gaps = 14/201 (6%)

Query: 137 VSQLEQKNQSLEFQVAERTRELSWVNQQLQRQLDENRELAERDALTRVANRYRLESALQL 196
           ++ LE++N+ LE  +  RT EL+  N +L++       L+  D LT + NR   +  LQ 
Sbjct: 141 MTSLEERNRELESIIQARTYELAEANNRLEK-------LSNTDGLTNIGNRRLFDQMLQK 193

Query: 197 ECQRAQRFRQPLSLIAMDMDDFKPINDRYGHARGDAALVRVAESL-RTCLRELDLLARWG 255
           E  R QR   PLSLI +D+D FK  ND YGH  GD  L  +A  L ++  R  +L+AR+G
Sbjct: 194 EWSRGQRNNTPLSLIMLDIDHFKLFNDHYGHLAGDDCLKMLANGLSQSGRRAGELVARYG 253

Query: 256 GDEFVIVLPQTALGEALDVAARLRQVLEQVE-PVGDCRL---TMSYGVVQWREGEDQHA- 310
           G+EFVI+LP T L  ALD A  + Q+++ +  P     L   T+S GV      +  +A 
Sbjct: 254 GEEFVILLPNTDLQTALDTAKHVHQLIQSLAIPHIKTNLGIVTVSVGVACLLPSDKHNAL 313

Query: 311 -LLARADKALYRAKGTGKNAI 330
            L+ +AD ALY AK  G+N I
Sbjct: 314 ELVHQADTALYLAKSAGRNCI 334