Pairwise Alignments

Query, 339 a.a., branched-chain alpha-keto acid dehydrogenase complex, beta subunit from Pseudomonas putida KT2440

Subject, 622 a.a., 1-deoxy-D-xylulose-5-phosphate synthase (RefSeq) from Shewanella loihica PV-4

 Score = 58.9 bits (141), Expect = 3e-13
 Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 39/280 (13%)

Query: 19  MLERDDNVVVYGQDVGYFGGVFRCTEGLQNKYGKSRVFDAPISESGIVGTAVGMGAYGLR 78
           M ++DD V+     +    G+   ++   N+Y     FDA I+E   V  A G    G +
Sbjct: 332 MAQKDDKVLGITPAMREGSGMVEFSQRFPNQY-----FDAAIAEQHAVTLAAGFACEGYK 386

Query: 79  PVVEIQFADYFYPASDQIVSELARLRYRSAGEFIAPLTLRMPCGGGIYG--GQTHSQSPE 136
           PV+ I ++ +     DQ++ ++A  +         P+   +   GGI G  G TH  + +
Sbjct: 387 PVLAI-YSTFLQRGYDQLIHDVALQKL--------PVIFAID-RGGIVGPDGPTHQGAFD 436

Query: 137 AMFTQVCGLRTVM-PSNPYDAKGLLIASIECDD-PVIFLEPKRLYNGPFDGHHDRPVTPW 194
             + +      +M PS+  + + +L      ++ P     P+    G             
Sbjct: 437 LSYMRAIPNMVIMAPSDENECRQMLYTGYCYNEGPTAIRYPRGSATG------------- 483

Query: 195 SKHPHSAVPDGYYTVPLDKAAITRPGNDVTVLTYGTTVYVAQVAAEESGVDAEVIDLRSL 254
              P       Y    + K  I R G  + +L +GTT+  A  AAE   +DA + D+R +
Sbjct: 484 --EPQVETMTAY---EIGKGLIKREGKKIAILNFGTTLASASQAAE--ALDATLADMRFV 536

Query: 255 WPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLVQE 294
            PLD++ + +        V V E     G G+ ++ L+Q+
Sbjct: 537 KPLDVELVKQLATSHDLLVTVEENAIMGGAGSGVLELLQQ 576