Pairwise Alignments

Query, 246 a.a., flagellar basal-body rod protein FlgF from Pseudomonas putida KT2440

Subject, 528 a.a., fagellar hook-basal body proteins from Pseudomonas stutzeri RCH2

 Score = 48.5 bits (114), Expect = 3e-10
 Identities = 53/222 (23%), Positives = 88/222 (39%), Gaps = 46/222 (20%)

Query: 24  NNLANISTNGFQRDLEQARSMPVFGDSFPARAFAMTERP----------ATDFSEGPLVE 73
           NN+AN  T GF++      S   F D + A      + P          +  F++G +  
Sbjct: 22  NNIANAGTVGFKQ------SRAEFSDVYAASVLGTGKNPQGSGVLMSNISQQFNQGNINY 75

Query: 74  TGRDLDVAVTGKGFIAVQAPDGSEAYVRTGSLNIDALGVLRAG-----NGMPVIGNGGPI 128
           T   LD+A+ G GF  + + +G+ +Y R G    D  G L         G PV GNG   
Sbjct: 76  TQNALDLAINGNGFFQI-SNNGAVSYTRAGYFGTDRSGFLVDNFGYKLQGFPVDGNG--- 131

Query: 129 AIPPEQKVEVGADGTISIRSMGEDPRVMAEVDRIKLVNPDTK-----------GLTKGLD 177
                  ++ G  G + I++  + P+  ++++    +N   K            L    D
Sbjct: 132 ------NLQNGVIGDLQIQTTNQAPKATSQINTAFNLNSTQKSPVTWQSAYDASLQPAYD 185

Query: 178 GLIH---TTSGQPA-DADVNVRVVAGFLEGSNVNAVEEMTSV 215
              +   TT+GQ A DA+  V       E +   A+   T++
Sbjct: 186 AAYNTSLTTAGQAAYDAEFAVSGDPALAEDARAAALVNATNI 227