Pairwise Alignments

Query, 680 a.a., Flagellar hook-associated protein FlgK from Pseudomonas putida KT2440

Subject, 386 a.a., hypothetical flagellar hook-associated protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  190 bits (483), Expect = 9e-53
 Identities = 121/375 (32%), Positives = 191/375 (50%), Gaps = 5/375 (1%)

Query: 4   LISIGLSGLSASQAALSVTSNNIANAATSGYSRQQTVQAAGPSHNIGAGFLGTGTTLADV 63
           L++I  +G+ ASQ+ L VTSNNIANA T GY RQ   Q    S  +G+ F GTGT ++DV
Sbjct: 5   LLNIARTGVLASQSQLGVTSNNIANANTVGYHRQVATQTTLDSQRLGSSFYGTGTYVSDV 64

Query: 64  RRIYSSYLDNQLQTATSLQADSVTFQDQITSVDKLLADRDTGISSVLTAFFSALQTAAAK 123
           +RIY+ Y   +L+   +  + +     +++ +D++ +     +   LT  F+ L + A  
Sbjct: 65  KRIYNDYAARELRIGQTTLSAAEASYGKLSELDQIFSQIGKVVPQSLTDLFAGLNSLADL 124

Query: 124 PGDVASRQLLLTQAQTLSNRFNAVSTQLTQQNATINSQLDTMAGQVNKLTANIAEYNKQI 183
           P D+  R   L  A+ L+N  N + + L  Q    N Q+  M  ++N+++  +A  N ++
Sbjct: 125 PADLGIRSSTLNDAKQLANSLNQMQSTLNGQLNQTNDQITGMTKRINEISTELANLNLEL 184

Query: 184 TAASASGNTPNSLLDARSEAVRQLNELVGVTV-QERDGNYDVYLGSGQSLVTGTKANTLS 242
                S N    LLD +   V++L++   V V    +G   + LG    LV+G  A ++S
Sbjct: 185 ---MKSPNQDPILLDKQDALVQELSQYAQVNVIPLENGAKSIMLGGSIMLVSGEVAMSMS 241

Query: 243 VEPGVADKSQVALRINYDSFSSDVTSVVSGGAIGGLLRYRQDVLTPSMNELGRVALVVAD 302
              G    +++ L  +  S S        GG +G L  YR   L P+  EL ++AL VAD
Sbjct: 242 TATGDPFPNELQLMSSIGSQSVKADPSKLGGQLGALFEYRDQTLVPASLELDQLALGVAD 301

Query: 303 SINSQLGQGLDANGQFGSSLFSSINSATAIAQRSLASSNNSAGSGNLDVTIANSGALTTY 362
           S N    QG D NGQ G+++F  IN       R +    ++ G+  L V I ++ ALT  
Sbjct: 302 SFNKLQAQGFDLNGQVGANMFKDINDPLMSLGR-VGGFTDNTGNATLGVNIDDTSALTGG 360

Query: 363 DYEVKFTSASQYSVR 377
            YE+ FT+ S Y +R
Sbjct: 361 SYELSFTAPSTYELR 375