Pairwise Alignments

Query, 491 a.a., Transcriptional regulator FleQ from Pseudomonas putida KT2440

Subject, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  445 bits (1145), Expect = e-129
 Identities = 258/499 (51%), Positives = 331/499 (66%), Gaps = 38/499 (7%)

Query: 6   KILLIDDDSARRRDLAVVLNFLGEENLACASHDWQQAVEPLSSSREVLCVLIGTVNAPGN 65
           K+L+I+DD+A R +L+V+L F+GE+   C   +  Q ++ ++ S      ++G++     
Sbjct: 6   KLLVIEDDAAIRLNLSVILEFVGEQ---CEVIESTQ-IDQINWSAVWGGCILGSLRGQAL 61

Query: 66  LLGLLKTVATWDEFLPVLLLGE--ISSAELPEDLRRRVLSNLEMPPSYSQLLDSLHRAQV 123
              L++++ T    +P+L+  +   S  E P       +  L+ P +Y QL D+L   + 
Sbjct: 62  SEQLIQSL-TKANHIPLLVANKQPYSLEEFPN-----YVGELDFPLNYPQLSDALRHCKE 115

Query: 124 YREMYDQARERGRQ-----REPNLFRSLVGTSRAIQHVRQMMQQVADTDASVLILGESGT 178
           +         +G Q     R+  LFRSLVG S  IQ VR +++QV+ T+A+VLILGESGT
Sbjct: 116 F------LGRKGFQVLATARKNTLFRSLVGQSMGIQEVRHLIEQVSTTEANVLILGESGT 169

Query: 179 GKEVVARNLHYHSKRREAPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELAN 238
           GKEVVARN+HYHS RR  PFVP+NCGAIPAELLESELFGHEKGAFTGAIT+R GRFELA 
Sbjct: 170 GKEVVARNIHYHSGRRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFELAE 229

Query: 239 GGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQSIDVRIIAATHKNLETMIEDGT 298
           GGTLFLDEIGDMP+ MQVKLLRVLQER FERVG N T   +VR+IAATH+NLE MI+   
Sbjct: 230 GGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQK 289

Query: 299 FREDLYYRLNVFPIEMAPLRERVEDIPLLMNELISRMEHEKRGSIRFNSASIMSLCRHGW 358
           FREDLYYRLNVFPIEM  LR+R++DIPLL+ EL++RME E    I F   +I S+  H W
Sbjct: 290 FREDLYYRLNVFPIEMPALRDRIDDIPLLLQELMTRMEAEGAQPICFTPRAINSMMEHDW 349

Query: 359 PGNVRELANLVERMAIMHPYGVIGVSELPKKFRYVDDEDEQMVDSLRSDLE--ERVAING 416
           PGNVRELANLVERM I++P  ++ V+ LP K+RY D  + Q   S  S +E  ER  + G
Sbjct: 350 PGNVRELANLVERMVILYPNSLVDVNHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEG 409

Query: 417 -------------HTPNFSNHAMLPPEGLDLKDYLGSLEQGLIQQALDDANGIVARAAER 463
                          P+      LPPEG++LK+ L  LE  LI QAL+   G+VARAA+ 
Sbjct: 410 IFAEDFNFEEPQEFVPDIDAPQALPPEGVNLKELLADLEVNLINQALEAQGGVVARAADM 469

Query: 464 LRIRRTTLVEKMRKYGMSR 482
           L +RRTTLVEKMRKY M R
Sbjct: 470 LGMRRTTLVEKMRKYNMQR 488