Pairwise Alignments

Query, 491 a.a., Transcriptional regulator FleQ from Pseudomonas putida KT2440

Subject, 477 a.a., sigma-54 dependent trancsriptional regulator (RefSeq) from Shewanella sp. ANA-3

 Score =  456 bits (1173), Expect = e-133
 Identities = 257/493 (52%), Positives = 332/493 (67%), Gaps = 27/493 (5%)

Query: 1   MWRETKILLIDDDSARRRDLAVVLNFLGEENLACASHDWQQAVEPLSSSREVLCVLIGTV 60
           M  + +ILL+   S R   L  +  FLGE+    A       +E LS   +        V
Sbjct: 2   MQTDQRILLVGTPSERLSRLCCIFEFLGEQIEIVA-------IEKLSLCLQDTRFRALVV 54

Query: 61  NAPGNLLGLLKTVATWDEFLPVLLLGEISSAELPEDLRRRVLSNLEMPPSYSQLLDSLHR 120
            A       LK++A+   + P+LL G +   ++       VL ++E P +Y QL + LH 
Sbjct: 55  TADNMPADALKSLASQYPWQPILLFGNVDDLQVSN-----VLGHIEEPLNYPQLTELLHF 109

Query: 121 AQVYREMYDQARERGRQREPNLFRSLVGTSRAIQHVRQMMQQVADTDASVLILGESGTGK 180
            QVY ++  + +      +  LFRSLVG S  I +VR ++ QVA +DA+VL+LG+SGTGK
Sbjct: 110 CQVYGQV-KRPQVPTSANQTKLFRSLVGRSEGIANVRHLISQVATSDATVLVLGQSGTGK 168

Query: 181 EVVARNLHYHSKRREAPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGG 240
           EVVARN+HY S+RR+ PF+PVNCGAIP ELLESELFGHEKG+FTGAI+SR GRFELA GG
Sbjct: 169 EVVARNIHYLSERRDGPFIPVNCGAIPPELLESELFGHEKGSFTGAISSRKGRFELAEGG 228

Query: 241 TLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQSIDVRIIAATHKNLETMIEDGTFR 300
           TLFLDEIGDMPL MQVKLLRVLQER FERVG  KT + DVR++AATH++LETMI    FR
Sbjct: 229 TLFLDEIGDMPLQMQVKLLRVLQERVFERVGGTKTINADVRVVAATHRDLETMISSNEFR 288

Query: 301 EDLYYRLNVFPIEMAPLRERVEDIPLLMNELISRMEHEKRGSIRFNSASIMSLCRHGWPG 360
           EDLYYRLNVFPIEM  L ER +D+PLL+ EL+SR+ +E RG +RF   +I SL  H W G
Sbjct: 289 EDLYYRLNVFPIEMPALSERKDDVPLLLQELVSRVYNEGRGKVRFTQRAIESLKEHAWSG 348

Query: 361 NVRELANLVERMAIMHPYGVIGVSELPKKFRYVD--------DEDEQMVDSLRS--DLEE 410
           NVREL+NLVER+ I++P G++ V++LP K+R++D         E++Q  D+L S    EE
Sbjct: 349 NVRELSNLVERLTILYPGGLVDVNDLPVKYRHIDVPEYCVEMSEEQQERDALASIFTSEE 408

Query: 411 RVAINGHTPNFSNHAMLPPEGLDLKDYLGSLEQGLIQQALDDANGIVARAAERLRIRRTT 470
            V I    P     + LPPEG++LKD L  LE  +I+QAL+  + +VARAAE L IRRTT
Sbjct: 409 PVEI----PETRFPSELPPEGVNLKDLLAELEIDMIRQALELQDNVVARAAEMLGIRRTT 464

Query: 471 LVEKMRKYGMSRQ 483
           LVEKMRKYGM+++
Sbjct: 465 LVEKMRKYGMTKE 477