Pairwise Alignments

Query, 451 a.a., two component system AtoC DNA-binding transcriptional activator from Pseudomonas putida KT2440

Subject, 447 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  448 bits (1153), Expect = e-130
 Identities = 248/450 (55%), Positives = 312/450 (69%), Gaps = 13/450 (2%)

Query: 4   KVLLVEDDRVLRQALGDTLEIGGFAYQAVGSAEEALEAVLEDAFSLVVSDVNMPGMDGHQ 63
           K+LLVEDD  LR+AL DTL +  +    V SAE A+ A+    F +V+SDV M G+ G  
Sbjct: 5   KILLVEDDAALREALVDTLLLAQYECVDVESAEAAIVALKGQEFDMVISDVQMEGIGGLG 64

Query: 64  LLSQLRRQQPQLPVLLMTAHAAVERAVEAMRQGAADYLVKPFEPKALLNLVERHAAGRVT 123
           L++ L++   Q+P+LLMTA A ++ AV A++ GA DYL KPF P+ LLN V R+   ++ 
Sbjct: 65  LVNYLQQHNAQVPILLMTAFATIDSAVSAIKLGAVDYLAKPFAPEVLLNQVSRYLKPKLI 124

Query: 124 GEEGPVACEPASRQLLELAARVARSDSTVLISGESGTGKEVLARYIHQQSPRAAQPFVAI 183
            E+ PV  +  S  LL LA +VA+SD++V+I G SG+GKEVLARYIHQ S RA +PFVAI
Sbjct: 125 -EDQPVVADERSLALLALAQKVAQSDASVMIMGPSGSGKEVLARYIHQHSQRANEPFVAI 183

Query: 184 NCAAIPDNMLEATLFGHEKGAFTGAIAAQAGKFEQAEGGTLLLDEISEMPMALQAKLLRV 243
           NCAAIP+NMLEATLFG+EKGAFTGA  A  GKFEQA+GGTLLLDEISEM + LQAKLLRV
Sbjct: 184 NCAAIPENMLEATLFGYEKGAFTGAYQACPGKFEQAQGGTLLLDEISEMDLGLQAKLLRV 243

Query: 244 LQEREVERVGGRKPISLDIRVLATTNRDLAGEVAAGRFREDLYYRLSVFPLAWRPLRERP 303
           LQEREVER+GGRK I LD+RVLAT+NRDL      G FREDLYYR++VFPL W  L +RP
Sbjct: 244 LQEREVERLGGRKTIKLDVRVLATSNRDLKAMATKGDFREDLYYRINVFPLTWPALHQRP 303

Query: 304 GDILQLAERLLARHVAKMKHASVRLSPA----ARACLQAYAWPGNVRELDNALQRALILQ 359
            DIL LA  L+ RH    K A + ++P+    A   L  + WPGNVRELDN +QRALILQ
Sbjct: 304 ADILPLARHLVLRHA---KAAGLAVAPSLDDQASRRLLGHRWPGNVRELDNVVQRALILQ 360

Query: 360 QGGVIEAADFCLAGAIPLSAGTEPSL--EVVADAGGLGDDMRRHEYQMIIDTLRAERGRR 417
            G  I A D  +          EP+   E   +  GLGD+++  E+ +I++TL    G R
Sbjct: 361 TGDTICAKDIVID---TQDVMLEPAFDSEKTVEPEGLGDELKAQEHVIILETLNQCNGSR 417

Query: 418 KEAAERLGISPRTLRYKLAQMRDAGFDVEA 447
           K+ AE+LGIS RTLRYK+A+MRD G  + A
Sbjct: 418 KQVAEKLGISARTLRYKMARMRDMGIQIPA 447