Pairwise Alignments

Query, 451 a.a., two component system AtoC DNA-binding transcriptional activator from Pseudomonas putida KT2440

Subject, 477 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  328 bits (842), Expect = 2e-94
 Identities = 201/471 (42%), Positives = 266/471 (56%), Gaps = 45/471 (9%)

Query: 5   VLLVEDDRVLRQALGDTLEIGGFAYQAVGSAEEALEAVLEDAFSLVVSDVNMPGMDGHQL 64
           +L+V+DD   R  L   L   G+A +     E A+  V + A+  V+ DV M  MDG   
Sbjct: 6   ILIVDDDAAHRSMLRTMLRGWGYATEEADDGESAVAKVRQRAWDAVLMDVRMARMDGIAA 65

Query: 65  LSQLRRQQPQLPVLLMTAHAAVERAVEAMRQGAADYLVKPFEPKALLNLVERH------- 117
           L  +    P  PVL+MTA ++V+ AVEA+R GA DYL+KP +   L + +ER        
Sbjct: 66  LRHILDWNPATPVLIMTAFSSVDTAVEALRTGAYDYLIKPLDFDVLRHTLERALDHTRLA 125

Query: 118 --------------AAGRVTGEEGPVACEPASRQLLELAARVARSDSTVLISGESGTGKE 163
                          AG      G +       +L+E+ A VA S++TVLI+GESGTGKE
Sbjct: 126 SENRELRERLSSQGGAGAPGASHGIIGRSAPMHELVEMIATVAPSEATVLITGESGTGKE 185

Query: 164 VLARYIHQQSPRAAQPFVAINCAAIPDNMLEATLFGHEKGAFTGAIAAQAGKFEQAEGGT 223
           ++AR +H  S R+A+P V +NCAA+ + +LE+ LFGHE+GAFTGA   + G+F QA+GGT
Sbjct: 186 LVARALHAASHRSAKPLVTVNCAALTETLLESELFGHERGAFTGADRRREGRFVQADGGT 245

Query: 224 LLLDEISEMPMALQAKLLRVLQEREVERVGGRKPISLDIRVLATTNRDLAGEVAAGRFRE 283
           L LDEI EMP+ LQAKLLR LQ+ EV+RVG   P+++D+RV+A TNRDL  E AAGRFRE
Sbjct: 246 LFLDEIGEMPLTLQAKLLRALQQGEVQRVGSDTPLTVDVRVIAATNRDLREEAAAGRFRE 305

Query: 284 DLYYRLSVFPLAWRPLRERPGDILQLAERLLARHVAKMKHASVRLSPAARACLQAYAWPG 343
           DLYYRL+V  +    LRER GD+  LA   L R+  K +      +P A   L  + WPG
Sbjct: 306 DLYYRLNVIAVHVPALRERAGDVPLLAAFFLDRYTEKNRKHLKGFTPQAMDMLLRHDWPG 365

Query: 344 NVRELDNALQRALILQQGGVIEAADFCL---------------AGAIPLSAGTEPSLEVV 388
           NVREL+NA++RA+IL  G  +   +  L               AG     AG  P     
Sbjct: 366 NVRELENAIERAVILATGDYVTERELPLHFGGGGSGIAGSGGSAGTGEAGAGNAP----- 420

Query: 389 ADAGGL----GDDMRRHEYQMIIDTLRAERGRRKEAAERLGISPRTLRYKL 435
           AD  GL    G  +   E + II TLR     + EAA RLGI+  TL  KL
Sbjct: 421 ADGDGLAPYAGLSLEDLERRAIIATLRETADNKSEAARRLGITRATLHNKL 471