Pairwise Alignments

Query, 451 a.a., two component system AtoC DNA-binding transcriptional activator from Pseudomonas putida KT2440

Subject, 491 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  306 bits (784), Expect = 1e-87
 Identities = 169/375 (45%), Positives = 229/375 (61%), Gaps = 14/375 (3%)

Query: 1   MAIKVLLVEDDRVLRQALGDTLEIGGFAYQAVGSAEEALEAVLEDAFSLVVSDVNMPGMD 60
           M  ++L+++D+  +R +L   LE  GF      S E+ L  +  +   LV  D+ MPGMD
Sbjct: 1   MHARILIIDDEDGIRFSLRGILEDEGFEVLEAPSGEDGLALLARETPDLVFLDIWMPGMD 60

Query: 61  GHQLLSQLRRQQPQLPVLLMTAHAAVERAVEAMRQGAADYLVKPFEPKALLNLVER---- 116
           G  +L QL  Q+P LPV++++ H  +E AV A+R+GA D++ KP   + +L   +R    
Sbjct: 61  GLAVLDQLHAQRPDLPVIMISGHGTIETAVNAIRKGAHDFIEKPLSLEKVLIAAQRALEY 120

Query: 117 ---HAAGRVTGEEGPVAC-------EPASRQLLELAARVARSDSTVLISGESGTGKEVLA 166
                      +  P A         P    L    ARVA +D+ VLI+GE+GTGKE+ A
Sbjct: 121 GDLRRENEALRDSLPTAHADEMNGRSPVMETLRGQIARVAPTDAWVLITGENGTGKELAA 180

Query: 167 RYIHQQSPRAAQPFVAINCAAIPDNMLEATLFGHEKGAFTGAIAAQAGKFEQAEGGTLLL 226
           R IH  S RA +P VA+NCAAIP+ ++E+ LFGHEKGAFTGA +A+AGKFE A  GTL L
Sbjct: 181 RAIHAGSRRADRPLVAVNCAAIPEELIESELFGHEKGAFTGADSAKAGKFEMAHKGTLFL 240

Query: 227 DEISEMPMALQAKLLRVLQEREVERVGGRKPISLDIRVLATTNRDLAGEVAAGRFREDLY 286
           DEI +M +  QAK+LR+LQE++ ERVGG + + +D+RV+A TN++L  E+AAG FREDLY
Sbjct: 241 DEIGDMSLKTQAKILRILQEQQFERVGGHRTMRVDVRVIAATNKNLEDEIAAGTFREDLY 300

Query: 287 YRLSVFPLAWRPLRERPGDILQLAERLLARHVAKMKHASVRLSPAARACLQAYAWPGNVR 346
           YRL VFPL   PLRER GD+  L +    R            +P A+  L  Y WPGNVR
Sbjct: 301 YRLRVFPLVLPPLREREGDVPLLIDLFAQRLARDYGVRPATFAPDAQEALARYPWPGNVR 360

Query: 347 ELDNALQRALILQQG 361
           EL N ++R LIL  G
Sbjct: 361 ELRNFVERMLILHAG 375