Pairwise Alignments

Query, 451 a.a., two component system AtoC DNA-binding transcriptional activator from Pseudomonas putida KT2440

Subject, 456 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  313 bits (803), Expect = 6e-90
 Identities = 185/452 (40%), Positives = 262/452 (57%), Gaps = 21/452 (4%)

Query: 4   KVLLVEDDRVLRQALGDTLEIGGFAYQAVGSAEEALEAVLEDAFSLVVSDVNMPGMDGHQ 63
           ++L+V+DD   R  L   L   G+  +  G  E A+    E  F L++ D+ M  M G  
Sbjct: 8   RLLVVDDDTTHRGMLQTLLADWGYRTECAGDGETAVTLCRETPFDLILMDLRMGVMSGIG 67

Query: 64  LLSQLRRQQPQLPVLLMTAHAAVERAVEAMRQGAADYLVKPFEPKALLNLVER---HAAG 120
            L ++R   P +P+L+MTA++ VE AV+A+R GA DYL KP + + L   +ER   HAA 
Sbjct: 68  ALREIRAYNPAIPILIMTAYSNVESAVDAIRSGAYDYLTKPLDFEELRLTLERALDHAAL 127

Query: 121 RVTGEE------------GPVACEPASRQLLELAARVARSDSTVLISGESGTGKEVLARY 168
           R                 G +    +  +L+++ A +A S++TVL++GESGTGKE++AR 
Sbjct: 128 RDENAALKTTLASSFDPAGIIGQSQSMHRLMDMMASIAPSEATVLVTGESGTGKELIARA 187

Query: 169 IHQQSPRAAQPFVAINCAAIPDNMLEATLFGHEKGAFTGAIAAQAGKFEQAEGGTLLLDE 228
           IH  S R   P+V +NCAA+ + +LE+ LFGHEKGAFTGA   + G+F+ A+ GT+ LDE
Sbjct: 188 IHANSQRRHGPYVTVNCAALTETLLESELFGHEKGAFTGAEKRREGRFQSADKGTIFLDE 247

Query: 229 ISEMPMALQAKLLRVLQEREVERVGGRKPISLDIRVLATTNRDLAGEVAAGRFREDLYYR 288
           I E  + +QAKLLR +QERE++RVG  + + +D+R++A TNRDL  EV AGRFR+DLYYR
Sbjct: 248 IGETSLPMQAKLLRAIQEREIQRVGSDQTLRVDVRIIAATNRDLRAEVEAGRFRQDLYYR 307

Query: 289 LSVFPLAWRPLRERPGDILQLAERLLARHVAKMKHASVRLSPAARACLQAYAWPGNVREL 348
           L+V  L   PLRER  DI  LA   L R   K        +P A   L  + WPGNVREL
Sbjct: 308 LNVVTLHVPPLRERVEDIPLLAGHFLRRFTEKNGKRVKGFTPQAMDRLLKHDWPGNVREL 367

Query: 349 DNALQRALILQQGGVIEAADFCLAGAIPLSAGTEPSLEVVADAGGLGDDMRRHEYQMIID 408
           +NA +RA++L  G  I   +   A    ++ G   +   V    G+   +   E   I+D
Sbjct: 368 ENAAERAVVLLVGEYISERELPHA----IAGGDGDATCAVPRFNGM--TLEEIERAAILD 421

Query: 409 TLRAERGRRKEAAERLGISPRTLRYKLAQMRD 440
            + A  G + EAA RLGI+ +TL  KL +  D
Sbjct: 422 AMDASEGNKSEAARRLGITRKTLHAKLNRYAD 453