Pairwise Alignments

Query, 322 a.a., flagellar synthesis, switching and energizing component from Pseudomonas putida KT2440

Subject, 374 a.a., flagellar motor switch protein fliM from Caulobacter crescentus NA1000

 Score =  148 bits (373), Expect = 2e-40
 Identities = 93/322 (28%), Positives = 173/322 (53%), Gaps = 10/322 (3%)

Query: 2   AVQDLLSQDEIDALLHGVDDGLVQTESASEPGSIKSYDLTSQDRIVRGRMPTLEMINERF 61
           A + +L+QDEID+LL G D     ++  +   +I +  L S +R+     P LE++ +R 
Sbjct: 47  ASERILNQDEIDSLL-GFDLSGDGSDDRTGIRAIINSALVSYERL-----PMLEIVFDRL 100

Query: 62  ARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTSLFILDAK 121
            R    S+ N    + +V++  +  ++FG+Y++S+ +P  L + + + L    L  +D+ 
Sbjct: 101 VRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILAVFRAEELDNYGLLTVDSN 160

Query: 122 LVFKLVDNFFGGDGRHA--KIEGREFTPTELRVVRMVLDQCFVDLKEAWQAIMPVSFEYM 179
           L++ +VD   GG    A  +IEGR +T  E  +V+ +++    DLK A++ + PVSF   
Sbjct: 161 LIYSIVDVLLGGRRGTAAMRIEGRPYTTIERVLVQRMIEVVLHDLKSAFEPLHPVSFSLD 220

Query: 180 NSEVNPAMANIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDLDD 239
             E NP  A I  P+ A ++    I+++  GG + + +PY+ +EP+R+ML   F  +   
Sbjct: 221 RLETNPRFAAIARPANAAILVKLRIDMEDRGGRIELLLPYATLEPIRKMLLQQFMGEKFG 280

Query: 240 QDERWVKALREDVLDVAVPMTATVARRQLKLRDILHMQPGDVIPVE-LPEHLV-LRANGV 297
           +D  W   L  ++    + + A +  +Q+ L  +L+MQ GD + +   P+ LV LRA  +
Sbjct: 281 RDNIWEGHLATELWTTQMEVRAVLDEQQVPLSRVLNMQVGDTLMLNATPDSLVELRAGAI 340

Query: 298 PAFKARLGSHKGNLALQIIDPI 319
           P  + R+G    ++A++   P+
Sbjct: 341 PLTRGRMGRRNHSIAVRAEAPL 362