Pairwise Alignments

Query, 352 a.a., D-alanine--D-alanine ligase A from Pseudomonas putida KT2440

Subject, 306 a.a., D-alanine--D-alanine ligase Ddl from Phaeobacter inhibens DSM 17395

 Score =  115 bits (288), Expect = 1e-30
 Identities = 107/340 (31%), Positives = 153/340 (45%), Gaps = 54/340 (15%)

Query: 6   IALVFGGRSSEHSVALRSAATIHAALMALGHRVHCVGIDREGNWRYQGEPCQFPGAVDRS 65
           +A++ GG S+E  V+L +      AL   G++V                  +     D +
Sbjct: 11  VAVLMGGPSAEREVSLSTGRECATALRDEGYQV-----------------TELDAGPDLA 53

Query: 66  APLISIRPGHRSLSYTTQESGTVEIGIDLLFPALHGRWGEDGTIQGLAAMCGLPCVGSGV 125
           A L + RP                   D++F ALHGRWGEDG +QGL    G+P   SGV
Sbjct: 54  ARLQADRP-------------------DVVFNALHGRWGEDGCVQGLLEWLGIPYTHSGV 94

Query: 126 LGSAMAMDKDVTKRMVQSAGLVVVPWLAMNSMRPWEELVECLGSSTLFVKPATSGSSIGV 185
           L SA+AMDK   K + ++AGL VV           E +   + +    VKP   GSS+GV
Sbjct: 95  LASALAMDKQRAKSIYRAAGLPVV---ESGIYSKAEVMAGHVMAPPYVVKPNNEGSSVGV 151

Query: 186 SRVSNALEYAAAFAIAAREDTKVLVEAAVCGREIECGVLELEEGLMASVVGEIIKKEGHA 245
             V+          ++     +V+VE+   GRE+   VL    G     V +I+      
Sbjct: 152 YLVNEVAN--GPPQLSQDMPDEVMVESFAPGRELTTTVL----GDKPLTVTDILT---DG 202

Query: 246 YYDYQAKYDSNSVTGLRVPSLLPPDIVARIQALSVQAFRCLELKGYARVDFFLTE----E 301
           +YDY AKY       + +P+ +P +I A     +V+A   L  +G +R DF   E    E
Sbjct: 203 WYDYDAKYKPGGSRHV-LPADVPEEIFALCLDYAVKAHDALGCRGISRTDFRWDEARGAE 261

Query: 302 GEIILNEINTLPGFTSASMYPKMFECSGYPPPKLVGALVE 341
           G +IL E NT PG T  S+ P+  E SG    +L   LVE
Sbjct: 262 G-LILLETNTQPGMTPTSLTPEQAEHSGMTFGQLCSWLVE 300