Pairwise Alignments

Query, 709 a.a., flagellar export pore protein from Pseudomonas putida KT2440

Subject, 695 a.a., Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) from Pseudomonas fluorescens FW300-N2E2

 Score =  342 bits (877), Expect = 4e-98
 Identities = 232/688 (33%), Positives = 371/688 (53%), Gaps = 43/688 (6%)

Query: 27  LLLVMLAMMMLPIPPFLLDVFFTFNIALSIVVLLVCVYALRPLDFAAFPTILLVATLLRL 86
           ++L ++ M++LP+P  ++D     NI +S +++++ +Y  RPL F++FP +LL+ TL RL
Sbjct: 23  VVLGIVFMLILPLPTSVVDALIAINICISCLLIVLSLYLPRPLAFSSFPAVLLLTTLFRL 82

Query: 87  ALNVASTRVVMLHGQEGHGAAGKVIQAFGEVVIGGNYVVGAVVFAILMIINFVVVTKGAG 146
           AL+VA+TR+++L G  GH     ++QAFG+ V+GGN  VG V+F IL ++NF+V+TKG+ 
Sbjct: 83  ALSVATTRLILLQGDAGH-----IVQAFGDFVVGGNLAVGLVIFLILTVVNFLVITKGSE 137

Query: 147 RISEVSARFTLDAMPGKQMAIDADLNAGLIDQAQAKHRRAEVAQEAEFYGSMDGASKFVR 206
           R++EV+ARFTLDA+PGKQM+ID+DL A LID ++A+ RR E+ +E++ +G+MDGA KFV+
Sbjct: 138 RVAEVAARFTLDALPGKQMSIDSDLRANLIDVSEARRRREELNKESQLFGAMDGAMKFVK 197

Query: 207 GDAIAGLLILFINLIGGMLIGMLQHNMSFSEAGKVYALLTIGDGLVAQLPSLLLSTAAAI 266
           GDAIAGL+I+ INLIGG  +GM+QH+M  SE+  +YA+LTIGDGL+AQ+P+LL+S  A +
Sbjct: 198 GDAIAGLVIVVINLIGGFSVGMMQHDMGASESMHLYAVLTIGDGLIAQIPALLISLTAGM 257

Query: 267 MVTRAS-----GSEDMGKLINRQMFDSPKALAVSGALMIVMGLVPGMPHIAFLSLGLMAA 321
           ++TR S         +GK I +Q+   PKA  ++   M+    +PGMP + F+ + L+  
Sbjct: 258 IITRVSPQGEPAGSSVGKEIAQQLTAEPKAWVIASVGMLGFAALPGMPTLVFIVIALI-T 316

Query: 322 GGAYLVWKKQQQAKVKAQQEAQRQQDLLPSPQRALETKELGWDDVTPIDMIGLEVGYRLI 381
           G A +V       ++ ++    RQ D    P   +   + G +D+   D     +     
Sbjct: 317 GTAGIV-------QLYSRARLARQGD---QPAEVVAPAQNGAEDLRSFDPTRAYLLQFSK 366

Query: 382 PLVDRNQGGQLLARIKGVRKKLSQDLGFLMPTVHIRDNLDLQPSAYRLTLMGVILAEAEI 441
            +       + +  I+  R  L    G  +P   I  +  L+   +R  +  V +  A  
Sbjct: 367 AMEGNAAAEEAIQAIRKKRNALVAGFGLTLPPFEIEYSALLEDDEFRFCVHEVPMLRATF 426

Query: 442 YPDRELAINP-------GQVFGTLNGIAARDPAFGLEAVWIDVGQRSQAQSLGYTVVDAS 494
                +A  P       GQV     G   RD     + +W+       A       V A+
Sbjct: 427 GERVAVARGPLPLEPRDGQV-----GSEVRDEQ---QWLWLTPDDPLLADE-RVEAVSAA 477

Query: 495 TVVATHLNQILQKHCHELIGHEEVQQLLQVLAKASPKLAEELVPGVISLSGLLKVLQALL 554
            ++   +++ +     + +G +E + +L  L    P+L +EL    + L+    VLQ L 
Sbjct: 478 ELLVERMSRAMFATGPQFLGLQESKSILSWLEAGQPELVQEL-QRTMPLARFAAVLQRLA 536

Query: 555 SEQVPVRDIRSIAEAIANNAGKSQDTAALVAAVRVGLCRAIVQSIVGVESELPVITLEPR 614
            E VP+R +R IAE++  +    +D  AL    R+ L   I       E  L V  L P 
Sbjct: 537 GEGVPLRAVRLIAESLIEHGQHERDVGALTDYARIALKSQIYHQYRD-EDGLHVWLLTPE 595

Query: 615 LEQILLNSLQRAGQGQEDGVLLEPSMAEKLQRSLIEAAQRQEMQGQPAILLVAGPIRAML 674
            E +L ++L++     E    LE      L   L E    +    + A+LLVA  +RA L
Sbjct: 596 TEGLLRDALRQT--QTETFFALESLHTRALVMQLREGFPLRAK--RVAVLLVAQDLRAPL 651

Query: 675 SRFGRLAVPNLHVLAYQEIPDNKQVTIV 702
               R    ++ VLA+ E+  N QVT++
Sbjct: 652 RDLLRDEFNHVPVLAFSELHSNAQVTVL 679