Pairwise Alignments

Query, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

Subject, 247 a.a., RNA polymerase sigma factor for flagellar operon from Pseudomonas fluorescens FW300-N2E2

 Score =  441 bits (1135), Expect = e-129
 Identities = 222/247 (89%), Positives = 237/247 (95%), Gaps = 1/247 (0%)

Query: 1   MNASGFK-MYSRAAKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEV 59
           M ASG+  +Y ++A+DAQYELIERYAPLVKRIAYHLLARLPA+VQVEDLIQAGMIGLLEV
Sbjct: 1   MTASGYNHLYKKSARDAQYELIERYAPLVKRIAYHLLARLPASVQVEDLIQAGMIGLLEV 60

Query: 60  ANKYDASKGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAMRAVEARTGRDA 119
           +NKYDASKGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDA+RA+EA+TGRDA
Sbjct: 61  SNKYDASKGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAIRAIEAKTGRDA 120

Query: 120 KDHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASGQVEPARGLEE 179
           KDHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHED AS  +EP+R LE+
Sbjct: 121 KDHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDNASAHMEPSRDLED 180

Query: 180 ERFQAALTEAIANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRSR 239
           ERFQ+AL +AIANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLR R
Sbjct: 181 ERFQSALADAIANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRGR 240

Query: 240 LGEWRAR 246
           LGEWRAR
Sbjct: 241 LGEWRAR 247