Pairwise Alignments

Query, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

Subject, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

 Score =  249 bits (637), Expect = 3e-71
 Identities = 129/229 (56%), Positives = 163/229 (71%), Gaps = 2/229 (0%)

Query: 15  DAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASKGASFETY 74
           ++Q   +E+Y+ LVKRIA+HL+ RLP +V +EDLIQAGM+GLLE    YD SKGASFETY
Sbjct: 14  NSQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDGSKGASFETY 73

Query: 75  AGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAMRAVEARTGRDAKDHEVAAELQLSLDD 134
           AGIRIRGAMLD++R+GDW PRSVH++ R +S A+  +E    RD  D EVA  L +SL+ 
Sbjct: 74  AGIRIRGAMLDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTDAEVAKFLNMSLEQ 133

Query: 135 YYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASGQVEPARGLEEERFQAALTEAIANLP 194
           Y+ +L D   SR+   +DL    +     E+G      P  G+ EE F+ AL E+I +LP
Sbjct: 134 YHSVLMDINCSRIVGIEDLGVSDDAISPFEEGEDN--SPFHGVAEESFRKALVESIKSLP 191

Query: 195 ERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRSRLGEW 243
           ERE LVL+LYYDEELNLKEIGEVLGVSESRVSQ+ SQ   RLR++L  W
Sbjct: 192 EREALVLSLYYDEELNLKEIGEVLGVSESRVSQILSQSMQRLRTKLSSW 240