Pairwise Alignments

Query, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

Subject, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

 Score = 58.9 bits (141), Expect = 1e-13
 Identities = 61/239 (25%), Positives = 105/239 (43%), Gaps = 15/239 (6%)

Query: 11  RAAKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASKGAS 70
           R  + A+  +IE    LV +I+     R    + + DLI+ G +GL+    K+D  +G  
Sbjct: 86  RGDEAARKRMIESNLRLVVKISRRYSNR---GLALLDLIEEGNLGLIRAVEKFDPERGFR 142

Query: 71  FETYAGIRIR----GAMLDEVRKGDWAPRSVHRNTRMVSDAMRAVEARTGRDAKDHEVAA 126
           F TYA   IR     A++++ R     P  V +   +     R +  R   +    E+A 
Sbjct: 143 FSTYATWWIRQTIERALMNQTRT-IRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIAL 201

Query: 127 ELQLSLDDYYGILNDTLGSRLFSFDDLL-QDGEHEGLHEDGASGQVEPARGLEEERFQAA 185
           EL   +DD   +L   L  R+ S D  +  DG+   L     S   +P    +++  + +
Sbjct: 202 ELDRPVDDVTKMLR--LNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRES 259

Query: 186 LTEAIANLPERERLVLALYYD----EELNLKEIGEVLGVSESRVSQLHSQCAARLRSRL 240
           L   +  L  +++ VLA  +     E   L+E+G  + ++  RV Q+  +   RLR  L
Sbjct: 260 LLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREIL 318