Pairwise Alignments

Query, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

Subject, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

 Score = 63.2 bits (152), Expect = 1e-14
 Identities = 61/235 (25%), Positives = 104/235 (44%), Gaps = 17/235 (7%)

Query: 13  AKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASKGASFE 72
           A+ A+ E++E    LV  IA     R    +Q  DLIQ G IGL++  +K++  +G  F 
Sbjct: 384 ARRAKKEMVEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 440

Query: 73  TYAGIRIRGAMLDEVRKGDWA-----PRSVHRNTRMVSDAMRAVEARTGRDAKDHEVAAE 127
           TYA   IR A+   +   D A     P  +      ++   R +    GR+    E+A  
Sbjct: 441 TYATWWIRQAITRSI--ADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAER 498

Query: 128 LQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASGQVE-PARGLEEERFQAAL 186
           +Q+  D    +L   +     S +  + D E   L +      +E P         +AA 
Sbjct: 499 MQMPEDKIRKVLK--IAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATSLKAAT 556

Query: 187 TEAIANLPERERLVLALYYDEELN----LKEIGEVLGVSESRVSQLHSQCAARLR 237
            + +A L  RE  VL + +  ++N    L+E+G+   V+  R+ Q+ ++   +LR
Sbjct: 557 RDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 611