Pairwise Alignments

Query, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

Subject, 398 a.a., RNA polymerase sigma factor SigC from Synechococcus elongatus PCC 7942

 Score = 62.0 bits (149), Expect = 2e-14
 Identities = 59/238 (24%), Positives = 100/238 (42%), Gaps = 12/238 (5%)

Query: 7   KMYSRAAKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDAS 66
           K   +  + A+  +I+    LV  +A     R    +++ DL+Q G +GL     K+D +
Sbjct: 150 KQVCKEGQRAKDHMIKANLRLVVSVAKKYQNR---GLELLDLVQEGTLGLERAVEKFDPT 206

Query: 67  KGASFETYAGIRIRGAMLDEVRKGDWA---PRSVHRNTRMVSDAMRAVEARTGRDAKDHE 123
           KG  F TYA   IR  +   +         P  V      +  A R +    GR A   E
Sbjct: 207 KGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHVTEKLNRIKKAQRKIAQTKGRTANLEE 266

Query: 124 VAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASGQVEPARGLEEERFQ 183
           +A EL+++ D    +L      +  S +  +   +   L +   +    P   L +E   
Sbjct: 267 IAQELEMTPDQVREVLLRV--PKSISLETRVGKEKDTELGDLLETTDFTPEERLTQESLS 324

Query: 184 AALTEAIANLPERERLVLALYY----DEELNLKEIGEVLGVSESRVSQLHSQCAARLR 237
             L   +  L  RER V+ + +     +  +L EIG+VL +S  RV Q+ ++   +LR
Sbjct: 325 NDLQRLLLELNHRERDVIRMRFGLRDGQIYSLAEIGQVLDLSRERVRQIEAKALQKLR 382