Pairwise Alignments

Query, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

Subject, 320 a.a., group2 RNA polymerase sigma factor SigB from Synechococcus elongatus PCC 7942

 Score = 75.1 bits (183), Expect = 2e-18
 Identities = 66/231 (28%), Positives = 104/231 (45%), Gaps = 12/231 (5%)

Query: 16  AQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASKGASFETYA 75
           A+ ++IE    LV  IA     R   +++  DLIQ G +GL     K+D SKG  F TYA
Sbjct: 85  AKRKMIEANLRLVVSIAKKYQKR---HMEFLDLIQEGTLGLERGVEKFDPSKGYKFSTYA 141

Query: 76  GIRIRGAMLDEVRKGDWA---PRSVHRNTRMVSDAMRAVEARTGRDAKDHEVAAELQLSL 132
              IR A+   + +       P  +      +    R +  + GR A   E+A  L+L L
Sbjct: 142 YWWIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQQLGRSATASELAEVLELPL 201

Query: 133 DDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASGQVEPARGLEEERFQAALTEAIAN 192
           +     +   +  +  S D  + D +   L E     Q  P+  +E+E  +  L   +A 
Sbjct: 202 EQVREYIQ--MNRQPVSLDVKVGDSQDTELQELLEDEQSSPSDYVEQESLRRDLRNLMAE 259

Query: 193 LPERERLVLALYY----DEELNLKEIGEVLGVSESRVSQLHSQCAARLRSR 239
           L  +++ V+AL Y     + L+L ++GE L +S  RV +L  Q    LR R
Sbjct: 260 LTPQQQAVIALRYGLDEGDSLSLAKVGERLNISRERVRKLERQAMDHLRRR 310