Pairwise Alignments

Query, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

Subject, 320 a.a., RNA polymerase sigma factor SigD from Synechococcus elongatus PCC 7942

 Score = 62.4 bits (150), Expect = 1e-14
 Identities = 68/234 (29%), Positives = 101/234 (43%), Gaps = 18/234 (7%)

Query: 14  KDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASKGASFET 73
           + A+ ++IE    LV  +A   L R   N+ + DLIQ G IG+     K+D +KG  F T
Sbjct: 83  EQAKRKMIEANLRLVVSVAKKYLKR---NMDLLDLIQEGTIGMQRGVEKFDPTKGYRFST 139

Query: 74  YAGIRIRGAM---LDEVRKGDWAPRSVHRNTRMVSDAMRAVEARTGRDAKDHEVAAELQL 130
           YA   IR A+   + E  +    P  +      +    R +  + GR A   E+AA L L
Sbjct: 140 YAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKMQRQLSQQLGRTATLPELAAALDL 199

Query: 131 S---LDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASGQVEPARGLEEERFQAALT 187
           +   + DY       L   L   D+  QD E   L E   +    P     +   +  + 
Sbjct: 200 TPAQVRDYLEKARHPLSLDLRVGDN--QDTELGDLLETDCT---TPEEFTLQASMRRDID 254

Query: 188 EAIANLPERERLVLALYYDEE----LNLKEIGEVLGVSESRVSQLHSQCAARLR 237
             +  L E++R V+AL Y  E    + L  IG+ L +S  RV QL  +    LR
Sbjct: 255 RLLDQLTEQQRQVIALRYGLEDGQVMTLASIGDRLQISRERVRQLEREALHTLR 308