Pairwise Alignments

Query, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

Subject, 311 a.a., DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like from Synechococcus elongatus PCC 7942

 Score = 58.2 bits (139), Expect = 2e-13
 Identities = 56/204 (27%), Positives = 88/204 (43%), Gaps = 11/204 (5%)

Query: 43  VQVEDLIQAGMIGLLEVANKYDASKGASFETYAGIRIRGAM---LDEVRKGDWAPRSVHR 99
           +++ DLIQ G +GL     K+D + G  F TYA   IR +M   +D   +    P  V  
Sbjct: 98  LELLDLIQEGSLGLERAVEKFDPALGYKFSTYAYWWIRQSMTRAIDNHARTIRLPIHVSE 157

Query: 100 NTRMVSDAMRAVEARTGRDAKDHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGEH 159
               +    R +  +  R     E+A  L+L L D   +L+ +             DG  
Sbjct: 158 KISRIKKMTRELTHQLKRLPSRAEIAEALKLPLQDVEMLLSQSTPCTSLDAQARGDDGRS 217

Query: 160 --EGLHEDGASGQVEPARGLEEERFQAALTEAIANLPERERLVLALYY----DEELNLKE 213
               L  D  S  +EP   ++       ++  +A+L ERE+ VL L +     E+  L E
Sbjct: 218 FLGDLIPDPKS--LEPMDAMDRHIQHEQISTWLAHLTEREQQVLQLRFGLHDGEQHTLAE 275

Query: 214 IGEVLGVSESRVSQLHSQCAARLR 237
           IG  L VS  R+ Q+ ++   +LR
Sbjct: 276 IGRRLNVSRERIRQVEARALQKLR 299