Pairwise Alignments

Query, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

Subject, 288 a.a., RNA polymerase factor sigma-32 from Sinorhizobium meliloti 1021

 Score = 67.4 bits (163), Expect = 3e-16
 Identities = 61/215 (28%), Positives = 99/215 (46%), Gaps = 27/215 (12%)

Query: 47  DLIQAGMIGLLEVANKYDASKGASFETYAGIRIRGAMLDEVRKGDW---------APRSV 97
           DL+Q G IGLLE A +++ S+   F TYA   IR +M D V + +W         A +++
Sbjct: 68  DLVQEGHIGLLEAAARFEPSREVRFSTYATWWIRASMQDYVLR-NWSIVRGGTSSAQKAL 126

Query: 98  HRNTRMVSDAMRAVEARTGRDAKDHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDG 157
             N R +   +   + +    A   E+AA L +SL D       T+ +RL   D  LQ  
Sbjct: 127 FFNLRRLRARLAQGDRQLTSQAMHEEIAAALGVSLADV-----QTMDARLSGNDASLQAP 181

Query: 158 EHEGLHEDGASGQVEPARG----------LEEERFQAALTEAIANLPERERLVLAL--YY 205
              G  + GA      +            ++ ER +  L  A+  L ERE  ++      
Sbjct: 182 IGSGDPDAGARLDFLASEAPLPDEQVSDLIDGERARRWLQVALGELSEREMKIIRARRLT 241

Query: 206 DEELNLKEIGEVLGVSESRVSQLHSQCAARLRSRL 240
           ++   L+E+G  LG+S+ RV Q+ ++   +LR+ L
Sbjct: 242 EDGATLEELGVALGISKERVRQIETRALEKLRAAL 276