Pairwise Alignments

Query, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

Subject, 696 a.a., Sigma 70 (RpoD) (NCBI) from Rhodospirillum rubrum S1H

 Score = 66.2 bits (160), Expect = 2e-15
 Identities = 65/240 (27%), Positives = 106/240 (44%), Gaps = 23/240 (9%)

Query: 11  RAAKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASKGAS 70
           R A  A+ E+IE    LV  IA     R    +Q  DLIQ G IGL++  +K++  +G  
Sbjct: 453 REASRAKKEMIEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYK 509

Query: 71  FETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAMRAVEA------RTGRDAKDHEV 124
           F TYA   IR A+   +   D A R++     M+    + V          GR+    E+
Sbjct: 510 FSTYATWWIRQAITRSI--ADQA-RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEEL 566

Query: 125 AAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLH---EDGASGQVEPARGLEEER 181
           A +LQ+ L+    +L   +     S +  + D E   L    ED     V+P        
Sbjct: 567 AEKLQMPLEKVRKVLK--IAKEPISLETPIGDEEDSHLGDFIED--KNAVQPLDAAINSN 622

Query: 182 FQAALTEAIANLPERERLVLALYYDEELN----LKEIGEVLGVSESRVSQLHSQCAARLR 237
            +   T  +A+L  RE  VL + +   +N    L+E+G+   V+  R+ Q+ ++   +L+
Sbjct: 623 LRETCTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 682