Pairwise Alignments

Query, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

Subject, 662 a.a., RNA polymerase sigma factor RpoD from Phaeobacter inhibens DSM 17395

 Score = 66.2 bits (160), Expect = 2e-15
 Identities = 63/240 (26%), Positives = 108/240 (45%), Gaps = 23/240 (9%)

Query: 11  RAAKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASKGAS 70
           + A+ A+ E++E    LV  IA     R    +Q  DLIQ G IGL++  +K++  +G  
Sbjct: 419 KEARQAKKEMVEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYK 475

Query: 71  FETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAMRAVEA------RTGRDAKDHEV 124
           F TYA   IR A+   +   D A R++     M+    + V          GR+    E+
Sbjct: 476 FSTYATWWIRQAITRSI--ADQA-RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEEL 532

Query: 125 AAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLH---EDGASGQVEPARGLEEER 181
           A +LQ+ L+    ++   +     S +  + D E   L    ED     V P     +E 
Sbjct: 533 AEKLQMPLEKVRKVMK--IAKEPISLETPIGDEEDSQLGDFIED--KNAVLPLDSAIQEN 588

Query: 182 FQAALTEAIANLPERERLVLALYYDEELN----LKEIGEVLGVSESRVSQLHSQCAARLR 237
            +   T  +A+L  RE  VL + +   +N    L+E+G+   V+  R+ Q+ ++   +L+
Sbjct: 589 LKETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 648