Pairwise Alignments

Query, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

Subject, 328 a.a., RNA polymerase sigma factor RpoS from Dechlorosoma suillum PS

 Score = 70.9 bits (172), Expect = 3e-17
 Identities = 70/248 (28%), Positives = 113/248 (45%), Gaps = 26/248 (10%)

Query: 9   YSRAAKDAQY----ELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYD 64
           +SR AK  ++    ++IE    LV  IA H L R    + + DL++ G +GL+    K+D
Sbjct: 74  WSRRAKAGEFAARQKMIEHNLRLVVNIAKHYLNR---GIPLLDLVEEGNLGLIHALEKFD 130

Query: 65  ASKGASFETYAGIRIRGAMLDEVRKGDWA---PRSVHRNTRMVSDAMRAVEARTG----R 117
             +G  F TYA   IR ++   +         P  V +   +V  AMR ++   G    R
Sbjct: 131 PERGFRFSTYATWWIRQSIERAIMNQSRTIRLPVHVVKEINVVLRAMRHLDGARGLTPSR 190

Query: 118 DAKDHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQ-DGEH---EGLHEDGASGQVEP 173
           + +  EVA  L   +DD   IL+  L   + S D  L  D  H   + + +D A    +P
Sbjct: 191 ETRVEEVAHLLGKPVDDIRHILH--LNEHVASLDTPLDIDPNHTVGDSVADDSAG--ADP 246

Query: 174 ARGLEEERFQAALTEAIANLPERERLVLALYYD----EELNLKEIGEVLGVSESRVSQLH 229
              L+E      + + +  LPE++R V+   Y     E   L+ I   LG++  RV Q+ 
Sbjct: 247 VGVLQENELNDLVLQWVEQLPEKQRQVVERRYGLKGAEIATLEAIAADLGLTRERVRQIQ 306

Query: 230 SQCAARLR 237
            +  ++LR
Sbjct: 307 GEALSQLR 314