Pairwise Alignments

Query, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

Subject, 323 a.a., RNA polymerase sigma factor SigB from Mycobacterium tuberculosis H37Rv

 Score = 65.9 bits (159), Expect = 1e-15
 Identities = 68/241 (28%), Positives = 103/241 (42%), Gaps = 25/241 (10%)

Query: 11  RAAKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASKGAS 70
           R  + A+  L+E    LV  +A     R    + + DLIQ G +GL+    K+D +KG  
Sbjct: 81  RDGEAARRHLLEANLRLVVSLAKRYTGR---GMPLLDLIQEGNLGLIRAMEKFDYTKGFK 137

Query: 71  FETYAGIRIRGA----MLDEVRKGDWAPRSVHRNTRMVSDAMRAVEARTGRDAKDHEVAA 126
           F TYA   IR A    M D+ R     P  +      ++   R +    GR+A D E+AA
Sbjct: 138 FSTYATWWIRQAITRGMADQSRT-IRLPVHLVEQVNKLARIKREMHQHLGREATDEELAA 196

Query: 127 ELQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASGQVEPARGLEEERFQAA- 185
           E  + +D     +ND L     S D +  D       E      +E A  +  E    A 
Sbjct: 197 ESGIPIDK----INDLLE---HSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAE 249

Query: 186 -----LTEAIANLPERERLVLALYY----DEELNLKEIGEVLGVSESRVSQLHSQCAARL 236
                +   +A L ERE  V+ L +     +   L +IG++ G+S  RV Q+     ++L
Sbjct: 250 LLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKL 309

Query: 237 R 237
           R
Sbjct: 310 R 310