Pairwise Alignments

Query, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

Subject, 616 a.a., RNA polymerase sigma-70 factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 64.3 bits (155), Expect = 6e-15
 Identities = 61/235 (25%), Positives = 104/235 (44%), Gaps = 17/235 (7%)

Query: 13  AKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASKGASFE 72
           A+ A+ E++E    LV  IA     R    +Q  DLIQ G IGL++  +K++  +G  F 
Sbjct: 375 ARRAKKEMVEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 431

Query: 73  TYAGIRIRGAMLDEVRKGDWA-----PRSVHRNTRMVSDAMRAVEARTGRDAKDHEVAAE 127
           TYA   IR A+   +   D A     P  +      ++   R +    GR+    E+A  
Sbjct: 432 TYATWWIRQAITRSI--ADQARTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAER 489

Query: 128 LQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASGQVE-PARGLEEERFQAAL 186
           + +  D    +L   +     S +  + D E   L +      +E P      E  ++A 
Sbjct: 490 MMMPEDKIRKVLK--IAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLKSAT 547

Query: 187 TEAIANLPERERLVLALYYDEELN----LKEIGEVLGVSESRVSQLHSQCAARLR 237
            E +A L  RE  VL + +  ++N    L+E+G+   V+  R+ Q+ ++   +LR
Sbjct: 548 HEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 602