Pairwise Alignments

Query, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

Subject, 265 a.a., RNA polymerase sigma factor for flagellar operon FliA (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  154 bits (388), Expect = 2e-42
 Identities = 89/230 (38%), Positives = 133/230 (57%), Gaps = 9/230 (3%)

Query: 9   YSRAAKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASKG 68
           ++ A K+A   ++  YAP ++ +A  L A+LP NV++ +LI AG +GL+E   K+    G
Sbjct: 31  FAPAEKEA---IVRHYAPKIRFLALRLKAKLPRNVELGELISAGTLGLMEALGKFKPQLG 87

Query: 69  ASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAMRAVEARTGRDAKDHEVAAEL 128
             FETYA  RIRGAMLDE+R+ DW PRS+ +  R + +AM+ +E  TGR A + ++    
Sbjct: 88  IRFETYAESRIRGAMLDELRRLDWFPRSLRQRVRQLDEAMQRIEHETGRRATEEDLQKAT 147

Query: 129 QLSLDDY-YGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASGQVEPARGLEEERFQAALT 187
            L   D   G+  + L ++L    + +QD       E G     +P +    +     + 
Sbjct: 148 GLDEKDVRLGL--EALQNQLCLSLEAMQDSL---AGEGGPQSDADPMQTAATQELIERVA 202

Query: 188 EAIANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLR 237
             I  L  RE+LVL+LYY +ELN++E  EV+G++E RVSQLHSQ   RLR
Sbjct: 203 SLIDELTPREKLVLSLYYSDELNMRETAEVMGITEGRVSQLHSQALGRLR 252