Pairwise Alignments

Query, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

Subject, 326 a.a., RNA polymerase, sigma 38 subunit, RpoS (RefSeq) from Shewanella sp. ANA-3

 Score = 57.8 bits (138), Expect = 3e-13
 Identities = 60/240 (25%), Positives = 107/240 (44%), Gaps = 15/240 (6%)

Query: 11  RAAKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASKGAS 70
           +  + ++  +IE    LV +IA     R    + + DLI+ G +GL+    K+D  +G  
Sbjct: 81  KGCEKSRNRMIESNLRLVVKIARRYNNR---GLALLDLIEEGNLGLIRAVEKFDPERGFR 137

Query: 71  FETYAGIRIR----GAMLDEVRKGDWAPRSVHRNTRMVSDAMRAVEARTGRDAKDHEVAA 126
           F TYA   IR     A++++ R     P  V +   +     R +  +   +    E+A 
Sbjct: 138 FSTYATWWIRQTIERAIMNQTRT-IRLPIHVVKELNVYLRTARELAQKLDHEPTAEEIAE 196

Query: 127 ELQLSLDDYYGILNDTLGSRLFSFD-DLLQDGEHEGLHEDGASGQVEPARGLEEERFQAA 185
           +LQ+S  D   +L   L  ++ S D  L  D +   L        V P   +++E    +
Sbjct: 197 KLQVSSVDVSRMLK--LNEKITSVDIPLGGDNDKALLDVLADDDNVGPDYKVQDEDISNS 254

Query: 186 LTEAIANLPERERLVLALYYD----EELNLKEIGEVLGVSESRVSQLHSQCAARLRSRLG 241
           + + +  L  ++R VLA  +     E   L+++G  +G++  RV Q+  +   RLR  LG
Sbjct: 255 VVKWLNELNTKQREVLARRFGLLGYEPSTLEDVGAEIGLTRERVRQIQVEALKRLRDLLG 314