Pairwise Alignments

Query, 662 a.a., holocytochrome c synthetase from Pseudomonas putida KT2440

Subject, 659 a.a., cytochrome c-type biogenesis protein CcmF (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  710 bits (1833), Expect = 0.0
 Identities = 348/649 (53%), Positives = 461/649 (71%), Gaps = 4/649 (0%)

Query: 6   VVPELGQLAMILAICFAVVQASVPLLGAWRGDSLWMSLARPAAWGQFAFLAFAFACLTHA 65
           ++PELG  ++I+ + FA +  SVPL+G  R D   +  A P A+G F F+A +   L ++
Sbjct: 1   MIPELGHFSLIIGVAFAFLLTSVPLIGVARKDQYLVRYAWPLAYGMFFFIALSVVSLGYS 60

Query: 66  FMTDNFSVAYVASNSNSALPWYYKFSAVWGAHEGSLLLWALILGGWTFAVSVFSRQLPQV 125
           F  D+FSVAYVA +SNS LP ++K +AVWG HEGSLL W   L  W  +V++FS+ L +V
Sbjct: 61  FAVDDFSVAYVAHHSNSQLPIFFKIAAVWGGHEGSLLFWVFALSTWAASVALFSKGLEEV 120

Query: 126 MLARVLAVMGMISVGFLSFLIITSNPFQRLLPQVPTDGRDLNPLLQDFGLIVHPPMLYMG 185
             ARVLAV+ +I +GF  F+++TS+PF+R+ P +P +GRDLNP+LQD GLI HPPMLY+G
Sbjct: 121 FTARVLAVLALIVIGFSLFMLLTSSPFERIFP-MPAEGRDLNPMLQDVGLIFHPPMLYLG 179

Query: 186 YVGFSVAFAFAIAALLGGRLDAAWARWSRPWTIVAWAFLGVGITLGSWWAYYELGWGGWW 245
           YVGFSV+FAFAIAAL+ G LD+AWARWSRPWT+ AW FL  GI LGSWWAYYELGWGGWW
Sbjct: 180 YVGFSVSFAFAIAALMSGHLDSAWARWSRPWTLAAWVFLTGGIALGSWWAYYELGWGGWW 239

Query: 246 FWDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVLLAIAAFSLSLLGTFLVRSGVLT 305
           FWDPVENASFMPWLVGTAL+HSL VTEKRG F++WTVLL+I AFSLSLLGTF+VRSGVLT
Sbjct: 240 FWDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLT 299

Query: 306 SVHAFAADPSRGIFILFFLLFVVGGSLTLFALRAPVVKSQVGFALWSRETLLLANNLVLV 365
           SVH+FAADPSRG+FIL  L   +GGSLTLFA RA  + S   F L S+ET+LL  N++L 
Sbjct: 300 SVHSFAADPSRGMFILLLLGLAIGGSLTLFAFRASEMSSPARFELKSKETMLLVCNVLLT 359

Query: 366 VAASMILLGTLYPLVLDALTGAKLSVGPPYFDALFLPLMALLMVVLSVGVVVRWKDT-PG 424
           VAA  +LLGTLYPL++DAL   K+SVGPPYF+A+F+P++ +L   + VG ++RWK +  G
Sbjct: 360 VAAGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLVLFAFMGVGPIIRWKKSKAG 419

Query: 425 KWLVSMMTPVLIGSAILAPVAGFIVDD-FDWPTLTAFALAAWVVLGGLRDIFDKTRHKGL 483
           +    ++ P L+ S ++  V  FIVD  F+       A AAW++L   +  +   + K  
Sbjct: 420 ELKRQLLVPALV-SLVIGIVTPFIVDGAFNAWVACGIAAAAWIILATAKAAYSIVKPKDG 478

Query: 484 VKGLPGLGRSYWGMQLAHLGLAVCALGVVLSSNNSAERDLRMAPGESVELGGYHFLFQGA 543
              +  +GRS  GM +AHLG+AV  +G  + SN S E+ +RM PG S EL GY F +   
Sbjct: 479 EVSIARMGRSQLGMIIAHLGIAVSVIGATMVSNYSVEKSVRMGPGVSQELAGYTFKYLET 538

Query: 544 KHFEGPNFISDKGTIVVSREGREVTTLYPEKRLYTVQQSMMTEAGIDAGFTRDLYVALGE 603
           K+  GPN+ + +G I + +  + +T L P++R Y V+   MTEAGID G  RDLYV +G+
Sbjct: 539 KNVVGPNYTAQQGQIEIYKGDKLLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGD 598

Query: 604 PLENGAWAVRVHIKPYVRWIWLGGLLTGLGGLLAALDRRYRVKVKTRVR 652
           P+ +  +AVR++ KP+VRW+W G +   +GG  AA D+RYR KV   V+
Sbjct: 599 PISSTEFAVRLNYKPFVRWLWFGAIFMMVGGFFAASDKRYRSKVAATVK 647