Pairwise Alignments

Query, 776 a.a., DNA ligase from Pseudomonas putida KT2440

Subject, 669 a.a., DNA ligase (NAD(+)) LigA from Vibrio cholerae E7946 ATCC 55056

 Score =  631 bits (1628), Expect = 0.0
 Identities = 352/684 (51%), Positives = 448/684 (65%), Gaps = 38/684 (5%)

Query: 6   RILELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQRVGGAA 65
           R+ ELR  L +H  RYYV D PS+PDAEYDRL  EL  LEA HP L++ DSP+ RVGG  
Sbjct: 7   RLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSLRVGGRP 66

Query: 66  LAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVEGLDQPGAVDYSCEPKLDGLAVSLLYR 125
           L AF  V HE+PMLSL NAF++ +L  F RR+ + +       + CEPKLDGLAVSLLY 
Sbjct: 67  LDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSAFCCEPKLDGLAVSLLYE 126

Query: 126 DGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGKGWPAVLEVRGEVYMSKAGFDRLNA 185
           +G L + ATRGDGTTGE+I+ NVRT+++IPL+LQG  +P  LEVRGEV+M KAGF+ LNA
Sbjct: 127 NGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAGFEALNA 186

Query: 186 AQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQV-SESIGDSHIGILEQL 244
              + G K F NPRNAAAGSLRQLDSKITA RPL F  Y VG +    +  SH     QL
Sbjct: 187 RALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGELATSHYQRFLQL 246

Query: 245 KAWGLPISRELKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRELGFRARE 304
           K WGLPI  E K    + E  A+Y+DI +RR SL YEIDGVV KV+ +  Q  LGF AR 
Sbjct: 247 KGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQERLGFVARA 306

Query: 305 PRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLHNMDEIAR 364
           PRWAIA+KFPA EELT + DVEFQVGRTGA+TPVA+L+PV V GVTVSNATLHN DEI R
Sbjct: 307 PRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIER 366

Query: 365 LGLRIGDTVIIRRAGDVIPQVMQVVLERRPQGARPVEVPSACPVCGSQVERTRLVKRSKG 424
           LG+ +GDTV+IRRAGDVIPQ++ VVLERRP+ A+ +  P+ CPVC S VER         
Sbjct: 367 LGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERV-------- 418

Query: 425 KETTSEG-AVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGEKSVEQLVDEGLIGSPAD 483
                EG AV RC G L C AQ K+A+ H+VSR+AMD++GLG+K +EQLVD  ++ +PAD
Sbjct: 419 -----EGEAVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPAD 473

Query: 484 LYKLQFEQVVGLEGFAEVSTQKLLDAIEASKRPSLARFIYALGIPDVGEETAKVLARSLG 543
           L++L+  ++  LE     S Q ++DA+  +K+ +L +F+YALGI +VGE TA  LA+   
Sbjct: 474 LFRLRAGELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFL 533

Query: 544 SLARVQQALPQVLTYLPDIGLEVAYEIHNFFEDEHNQKVIQQLLDSGMQLQDEGELAAEF 603
           SL  +QQA  +    +PD+G+ VA  +  FF  + NQ+VI +LL+ G+        AA  
Sbjct: 534 SLEAIQQASLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINELLEQGITW--PALTAAPV 591

Query: 604 AASTTLAGMIAKLDIASVGPTGAEKLVARLDSLDKIIAADGIDLRQALAAKQADAVRE-- 661
           A  + LAG I  L       TG+   ++R D+   +         QAL AK   +V +  
Sbjct: 592 AVDSALAGKIVVL-------TGSFTQLSRNDAKAAL---------QALGAKVTGSVSKNT 635

Query: 662 ---FFKDEANQKLARDIEAQLLAF 682
              F  + A  KLA+  E  +  F
Sbjct: 636 DMVFAGEAAGSKLAKATELGIQVF 659



 Score = 92.8 bits (229), Expect = 5e-23
 Identities = 69/173 (39%), Positives = 89/173 (51%), Gaps = 14/173 (8%)

Query: 604 AASTTLAGMIAKLDIASVGPTGAEKLVARLDSLDKIIAADGIDLRQALAAKQADAV---- 659
           A  TTL   +  L I  VG   A  L     SL+ I  A    L Q +       V    
Sbjct: 503 AKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQQAS---LEQFIEVPDVGVVVASH 559

Query: 660 -REFFKDEANQKLARDIEAQLLAFGMHWSS--EKKVAEGLPLAGQTWVLTGTLERMSRDI 716
            + FF  + NQ++  +    LL  G+ W +     VA    LAG+  VLTG+  ++SR+ 
Sbjct: 560 LQAFFAQDRNQQVINE----LLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRND 615

Query: 717 AKDKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKAAELGVKVLDEDAFVTFL 769
           AK  L++LGAKV GSVS  T  V AG  AGSKLAKA ELG++V DE A + FL
Sbjct: 616 AKAALQALGAKVTGSVSKNTDMVFAGEAAGSKLAKATELGIQVFDEQALIEFL 668