Pairwise Alignments

Query, 776 a.a., DNA ligase from Pseudomonas putida KT2440

Subject, 679 a.a., NAD-dependent DNA ligase LigA from Synechococcus elongatus PCC 7942

 Score =  488 bits (1257), Expect = e-142
 Identities = 282/640 (44%), Positives = 379/640 (59%), Gaps = 25/640 (3%)

Query: 6   RILELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQRVGGAA 65
           R  ELR  L Q +Y YYVLD+P + DA YDRL+ EL+ LE +HP L+TPDSPTQRVG   
Sbjct: 16  RASELRQLLQQASYAYYVLDQPVMEDAVYDRLYRELQDLEQQHPSLITPDSPTQRVGEQP 75

Query: 66  LAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVE-GLDQPGAVDYSCEPKLDGLAVSLLY 124
              F  V+H +P+ SL NAF+  +LR + +R  +   D P    Y CE K+DG A++L Y
Sbjct: 76  ATGFESVQHRIPLYSLENAFDAEELRSWDQRWRKLAPDVPADAGYVCELKIDGAAIALSY 135

Query: 125 RDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGKGWPAVLEVRGEVYMSKAGFDRLN 184
            +G LV+GATRGDGT GE+I+AN+RT+++IPL+LQ    P  LEVRGE ++S   F +LN
Sbjct: 136 ENGLLVRGATRGDGTRGEEITANLRTIKSIPLRLQTDQPPEWLEVRGEAFLSLTRFKQLN 195

Query: 185 AAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSESIGDSHIGILEQL 244
             + + G   FANPRNAAAG+LRQLD +I A R L+F  Y +   ++         L+ L
Sbjct: 196 TEREKHGEALFANPRNAAAGTLRQLDPRIVAERQLDFFAYSIQGPNDWANLDQAASLDCL 255

Query: 245 KAWGLPISRELKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRELGFRARE 304
           ++ G  +    +    + E   Y+ D   RR  LPY  DGVV K+ S   Q ELGF  + 
Sbjct: 256 QSLGFRVEPHRQTCPTLAEVEQYFSDWDARRRDLPYLTDGVVVKLQSRRLQDELGFTQKF 315

Query: 305 PRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLHNMDEIAR 364
           PRWAIA K+PA E  T++  V  QVGRTGA+TPVA   PV +AG TVS ATLHN D +  
Sbjct: 316 PRWAIALKYPADEAPTQLQHVTVQVGRTGALTPVAEFSPVALAGTTVSRATLHNADRLRE 375

Query: 365 LGLRIGDTVIIRRAGDVIPQVMQVVLERRPQGARPVEVPSACPVCGSQVERTRLVKRSKG 424
           L L IGDT+++R+AG++IP+V++V+ + RP  A+PV +P  CP CG  V+R         
Sbjct: 376 LDLHIGDTIVVRKAGEIIPEVVRVLTDLRPADAKPVVLPEKCPECGQPVQR--------- 426

Query: 425 KETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGEKSVEQLVDEGLIGSPADL 484
                E AV RCV    C A ++ A+ H+ SR A+DI+GLGEK V+QLV +GL+ + ADL
Sbjct: 427 ---PEEEAVTRCVNS-TCPAIVRGALTHWASRDALDIEGLGEKLVDQLVSKGLVNAIADL 482

Query: 485 YKLQFEQVVGLEGFAEVSTQKLLDAIEASKRPSLARFIYALGIPDVGEETAKVLARSLGS 544
           Y+L    +  LE F E S Q L+ AI  S++   +R +Y LGI  VG   AK LA +  S
Sbjct: 483 YRLDAPLLASLERFGEKSAQNLVQAIAKSRQQPWSRVLYGLGIRHVGSVNAKNLAATFTS 542

Query: 545 LARVQQALPQVLTYLPDIGLEVAYEIHNFFEDEHNQKVIQQLLDSGMQLQDEGELAAEFA 604
              + QA P  L  +  IG E+A  +H +F    NQ +I  L  +G+QL  E    A   
Sbjct: 543 AEALAQATPDELAAVYGIGSEIADAVHQWFTVATNQNLIAALEQAGLQLHGE----AASP 598

Query: 605 ASTTLAGMIAKLDIASVGPTGAEKLVARLDSLDKIIAADG 644
            S  LAG    L       TG    ++R ++   I AA G
Sbjct: 599 RSQALAGQTFVL-------TGTLPTLSRNEAKALIEAAGG 631



 Score = 90.1 bits (222), Expect = 3e-22
 Identities = 62/158 (39%), Positives = 83/158 (52%), Gaps = 6/158 (3%)

Query: 616 LDIASVGPTGAEKLVARLDSLDKIIAA--DGIDLRQALAAKQADAVREFFKDEANQKLAR 673
           L I  VG   A+ L A   S + +  A  D +     + ++ ADAV ++F    NQ L  
Sbjct: 523 LGIRHVGSVNAKNLAATFTSAEALAQATPDELAAVYGIGSEIADAVHQWFTVATNQNLIA 582

Query: 674 DIEAQLLAFGMHWSSEKKVAEGLPLAGQTWVLTGTLERMSRDIAKDKLESLGAKVAGSVS 733
            +E      G+    E        LAGQT+VLTGTL  +SR+ AK  +E+ G KV+GSVS
Sbjct: 583 ALEQA----GLQLHGEAASPRSQALAGQTFVLTGTLPTLSRNEAKALIEAAGGKVSGSVS 638

Query: 734 GKTHCVVAGPGAGSKLAKAAELGVKVLDEDAFVTFLAE 771
            KT  VVAG  AGSKL KA  L +  L+E   +  LA+
Sbjct: 639 KKTSYVVAGEEAGSKLEKAIALNIPQLNETQLLDLLAQ 676