Pairwise Alignments

Query, 776 a.a., DNA ligase from Pseudomonas putida KT2440

Subject, 717 a.a., NAD-dependent DNA ligase LigA from Sinorhizobium meliloti 1021

 Score =  478 bits (1231), Expect = e-139
 Identities = 286/683 (41%), Positives = 394/683 (57%), Gaps = 60/683 (8%)

Query: 10  LRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQRVGGAALAAF 69
           L AEL +H+  Y+  D P + DA+YD L      +E   P LV  DSP+++VG A    F
Sbjct: 23  LAAELARHDMLYHGKDAPEISDADYDALKRRNDLIEERFPVLVREDSPSRKVGAAPSLTF 82

Query: 70  SQVRHEVPMLSLGNAFEEADLREFGRRVVEGLDQ--PGAVDYSCEPKLDGLAVSLLYRDG 127
           + V H  PMLSL N F + D R F   V   L +   G++ ++ EPK+DGL++SL Y + 
Sbjct: 83  APVVHARPMLSLDNTFSDEDARAFVAGVYRFLGKLPDGSIAFTAEPKIDGLSMSLRYENR 142

Query: 128 QLVQGATRGDGTTGEDISANVRTVRNIPLKLQGKGWPAVLEVRGEVYMSKAGFDRLNAAQ 187
           +LV  ATRGDGTTGE+++ANVRT+  IP  L     P V+E+RGE+YM+K+ F  LNA  
Sbjct: 143 RLVTAATRGDGTTGENVTANVRTIGMIPQTLPADA-PDVVEIRGEIYMAKSDFAALNAEM 201

Query: 188 AEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSESIGDSHIGILEQLKAW 247
           A  G   + NPRN A+GSLRQLD+K+TA+R L F  Y  G++S    D+ +G++E  KAW
Sbjct: 202 AAQGRPLYVNPRNTASGSLRQLDAKVTANRKLRFFAYAWGEMSAMPADTQLGMVETFKAW 261

Query: 248 GLPISRELKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRELGFRAREPRW 307
           G P++  ++     +E L +Y  I   R  L Y+IDGVV+KV+ L  Q  LGFR+R PRW
Sbjct: 262 GFPVNPLMQRFFSADELLEHYHHIERERPDLDYDIDGVVYKVDRLDLQARLGFRSRSPRW 321

Query: 308 AIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLHNMDEIARLG- 366
           A AHKFPA +  T +  ++ QVGRTGA+TPVARL+P+ V GV V+NATLHN D I  +G 
Sbjct: 322 ATAHKFPAEQAFTRLKGIDIQVGRTGALTPVARLEPITVGGVVVTNATLHNEDYIRGVGN 381

Query: 367 ----------LRIGDTVIIRRAGDVIPQVMQVVLERRPQGARPVEVPSACPVCGSQVERT 416
                     +RIGD VI++RAGDVIPQ++ VV++ RP+GA P   P+ CP+CGS     
Sbjct: 382 TGEPIRDGRDVRIGDMVIVQRAGDVIPQIVDVVMDERPEGAEPYRFPTTCPICGSH---- 437

Query: 417 RLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGEKSVE---QLV 473
               R   ++T    AV RC G   C AQ  + + H+VSR A DI+GLG K +E   +  
Sbjct: 438 --AVRDINEKTGKVDAVRRCTGGFVCRAQAVEHLKHFVSRNAFDIEGLGSKQIEFFFESE 495

Query: 474 DEGL-IGSPADLYKLQFEQVVGL------EGFAEVSTQKLLDAIEASKRPSLARFIYALG 526
           DE L I +  +++ L+  Q   L      +GF +VS +KL +AI A +  +L R IYALG
Sbjct: 496 DENLRIRTAPEIFTLERRQEASLNKLENTDGFGKVSVRKLYEAINARRSIALHRLIYALG 555

Query: 527 IPDVGEETAKVLARSLGSLARVQQALPQV----------LTYLPDIGLEVAYEIHNFFED 576
           I  VGE TAK+LARS GS      A+ +           L  +  IG  VA  I  F+++
Sbjct: 556 IRHVGETTAKLLARSYGSYEHFGAAMTEAAGFSGDAWNELNSIDGIGEVVARAIVEFYKE 615

Query: 577 EHNQKVIQQLLDSGMQLQDEGELAAEFAASTTLAGMIAKLDIASVGPTGAEKLVARLDSL 636
             N KV+ +LL          E+  E           A+L +A+  P  A K V    SL
Sbjct: 616 PRNLKVVSELLQ---------EVTPE----------SAELPVATDSPV-AGKTVVFTGSL 655

Query: 637 DKIIAADGIDLRQALAAKQADAV 659
           +K+   +     ++L AK A +V
Sbjct: 656 EKMTREEAKAKAESLGAKVAGSV 678



 Score =  106 bits (265), Expect = 4e-27
 Identities = 74/176 (42%), Positives = 99/176 (56%), Gaps = 16/176 (9%)

Query: 606 STTLAGMIAKLDIASVGPTGAEKLVARLDSLDKIIAA------------DGIDLRQALAA 653
           S  L  +I  L I  VG T A+ L     S +   AA            + ++    +  
Sbjct: 544 SIALHRLIYALGIRHVGETTAKLLARSYGSYEHFGAAMTEAAGFSGDAWNELNSIDGIGE 603

Query: 654 KQADAVREFFKDEANQKLARDIEAQLLAFGMHWSSEKKVAEGLPLAGQTWVLTGTLERMS 713
             A A+ EF+K+  N K+     ++LL      S+E  VA   P+AG+T V TG+LE+M+
Sbjct: 604 VVARAIVEFYKEPRNLKVV----SELLQEVTPESAELPVATDSPVAGKTVVFTGSLEKMT 659

Query: 714 RDIAKDKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKAAELGVKVLDEDAFVTFL 769
           R+ AK K ESLGAKVAGSVS KT  VVAGPGAGSKL KA ELGV+ +DED ++  +
Sbjct: 660 REEAKAKAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALI 715