Pairwise Alignments

Query, 776 a.a., DNA ligase from Pseudomonas putida KT2440

Subject, 678 a.a., NAD-dependent DNA ligase from Marinobacter adhaerens HP15

 Score =  635 bits (1638), Expect = 0.0
 Identities = 342/629 (54%), Positives = 436/629 (69%), Gaps = 25/629 (3%)

Query: 6   RILELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQRVGGAA 65
           R+ ELR+ +D HNYRYYVLD+P VPDAEYDRLF EL+ LE ++P L +  SPT+RVG AA
Sbjct: 11  RVEELRSAIDDHNYRYYVLDDPRVPDAEYDRLFRELQGLETDYPELASDTSPTRRVGSAA 70

Query: 66  LAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVEGLDQPGAVDYSCEPKLDGLAVSLLYR 125
             +F +V H +PMLSL NAF E +LR+F RRV + L     V+Y CEPKLDGLAVSL Y 
Sbjct: 71  ETSFEEVVHRLPMLSLDNAFSEDELRDFDRRVKDRLGITEDVEYVCEPKLDGLAVSLHYE 130

Query: 126 DGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGKGWPAVLEVRGEVYMSKAGFDRLNA 185
           +G L   ATRGDG +GEDI+AN+RT+ ++PLKL+G   P ++EVRGEVYM K GF++LN 
Sbjct: 131 NGALTTAATRGDGYSGEDITANIRTIPSVPLKLRGDDVPDLVEVRGEVYMPKDGFEQLNR 190

Query: 186 AQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSES-IGDSHIGILEQL 244
             AE G KTF NPRNAAAGSLRQ  S +TA RPLE C Y V    ES + D+    L+++
Sbjct: 191 RLAERGEKTFVNPRNAAAGSLRQKKSTVTARRPLEMCAYSVAVTDESLLPDTQWEGLKRV 250

Query: 245 KAWGLPISRELKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRELGFRARE 304
           ++WG  I+ E++ A G EECL  Y ++ ++R+ LPYEIDG+VFKVN L  Q+ LGF +R 
Sbjct: 251 QSWGFRINPEMRKARGAEECLEAYSELMDKRDGLPYEIDGIVFKVNRLDQQKALGFVSRA 310

Query: 305 PRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLHNMDEIAR 364
           PRWAIA KFPA EELT + DVEFQVGRTGAVTPVARLKPV V GVTVSNATLHNMDEI R
Sbjct: 311 PRWAIAQKFPAQEELTVIEDVEFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNMDEIRR 370

Query: 365 LGLRIGDTVIIRRAGDVIPQVMQVVLERRPQGARPVEVPSACPVCGSQVERTRLVKRSKG 424
           L + IGDTV IRRAGDVIPQV++VV E+RP GAR VE+P  CPVC S V +         
Sbjct: 371 LDVHIGDTVFIRRAGDVIPQVVKVVAEKRPSGAREVELPRQCPVCDSDVIQI-------- 422

Query: 425 KETTSEG-AVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGEKSVEQLVDEGLIGSPAD 483
                EG AV RC G L C AQ K+AI HY SR+A+DI+GLG+K ++ +VD+G++ + AD
Sbjct: 423 -----EGEAVARCSGGLFCPAQRKEAIRHYASRKALDIEGLGDKWIDIMVDQGMVETVAD 477

Query: 484 LYKLQFEQVVGLEGFAEVSTQKLLDAIEASKRPSLARFIYALGIPDVGEETAKVLARSLG 543
           LY+L  + +V LE   E S   L+ AI+ ++ P L RF+YALGI +VGE TAK LA   G
Sbjct: 478 LYRLTTDDLVKLERMGEKSAANLVAAIDRARNPVLWRFLYALGIREVGEATAKALAGHFG 537

Query: 544 SLARVQQALPQVLTYLPDIGLEVAYEIHNFFEDEHNQKVIQQLLDSGMQLQDEGELAAE- 602
           +L  +  A  + L  +PD+G  VA  I +FFE  HN++ +  L ++G++ Q+E     E 
Sbjct: 538 TLEAIAAADEESLQTVPDVGPIVAGHIRSFFEQTHNRETLDALREAGVRWQEEEVREGEK 597

Query: 603 ------FAASTTLAGMI---AKLDIASVG 622
                 +  + TL+GM    AK  + S+G
Sbjct: 598 PLKGQTWVLTGTLSGMTRDEAKEKLESLG 626



 Score =  124 bits (312), Expect = 1e-32
 Identities = 105/287 (36%), Positives = 143/287 (49%), Gaps = 27/287 (9%)

Query: 510 IEASKRPSLARFIYA-----LGIPDVGEETAKVLARSLGSLARVQQALPQVLTYLPDIGL 564
           + A KRPS AR +       +   DV +   + +AR  G L    Q    +  Y     L
Sbjct: 394 VVAEKRPSGAREVELPRQCPVCDSDVIQIEGEAVARCSGGLFCPAQRKEAIRHYASRKAL 453

Query: 565 EVAYEIHNFFEDEHNQKVIQQLLD-------SGMQLQDEGELAA-------EFAASTTLA 610
           ++      + +   +Q +++ + D         ++L+  GE +A       + A +  L 
Sbjct: 454 DIEGLGDKWIDIMVDQGMVETVADLYRLTTDDLVKLERMGEKSAANLVAAIDRARNPVLW 513

Query: 611 GMIAKLDIASVGPTGAEKLVARLDSLDKIIAADGIDLRQA--LAAKQADAVREFFKDEAN 668
             +  L I  VG   A+ L     +L+ I AAD   L+    +    A  +R FF+   N
Sbjct: 514 RFLYALGIREVGEATAKALAGHFGTLEAIAAADEESLQTVPDVGPIVAGHIRSFFEQTHN 573

Query: 669 QKLARDIEAQLLAFGMHWSSEKKVAEG-LPLAGQTWVLTGTLERMSRDIAKDKLESLGAK 727
               R+    L   G+ W  E++V EG  PL GQTWVLTGTL  M+RD AK+KLESLGAK
Sbjct: 574 ----RETLDALREAGVRWQ-EEEVREGEKPLKGQTWVLTGTLSGMTRDEAKEKLESLGAK 628

Query: 728 VAGSVSGKTHCVVAGPGAGSKLAKAAELGVKVLDEDAFVTFLAEQGI 774
           VAGSVS KT CVVAG  AGSKLAKA +L V VLDE   V  L E G+
Sbjct: 629 VAGSVSKKTACVVAGEAAGSKLAKAEQLEVPVLDEAGLVALLEEHGL 675