Pairwise Alignments

Query, 325 a.a., cytochrome c oxidase subunit, cbb3-type from Pseudomonas putida KT2440

Subject, 326 a.a., cytochrome-c oxidase, cbb3-type subunit III from Vibrio cholerae E7946 ATCC 55056

 Score =  270 bits (691), Expect = 3e-77
 Identities = 147/328 (44%), Positives = 204/328 (62%), Gaps = 17/328 (5%)

Query: 1   MTTFWSLYVTVLTLGTIFSLTWLLLSTRKGQREEVTDETVGHAFDGIEEYDNPLPQWWFW 60
           MTTFWSL++ V+T+GT+     LL+   K +        +GH +DGI E +NPLP+WW +
Sbjct: 1   MTTFWSLWIIVITVGTLLGCAILLVWCLKDKMGVEEGVDMGHEYDGIRELNNPLPKWWTY 60

Query: 61  LFVGTIVFALGYLVLYPGLGNWKGVLPGYSYLDNDKQTEFSNGQPGWTGVH----EWEKE 116
           LF+GT +FA  YL LYPGLG++KG+L   S     +  E S         +    ++ KE
Sbjct: 61  LFIGTFIFAAIYLTLYPGLGSFKGILGWQSSDQTVRSLEESRASIAAAQQNKQLVQYSKE 120

Query: 117 MAKADARFGPIFAKFAAMP-------IEEVAKDPQALKMGARLFASNCSVCHGSDAKGAF 169
           +  A+A +G  F + A          I ++A D  ALK+G RLF  NCS CHGSDA+G  
Sbjct: 121 LDDAEAYYGEAFKRLAYQDGTTNLREIPDIAADSDALKVGQRLFLQNCSQCHGSDARGQK 180

Query: 170 GFPNLTDNDWRWGGEPETIKTTIMAGRHGVMPAWAEVIGDQGVADVAAFVVSKLDGRTLP 229
           GFPNLTD+ W +GGEP+ I TTI  GR G MPAW +++G+QGV +V ++ +S L GR++ 
Sbjct: 181 GFPNLTDDAWLYGGEPQAIVTTIRHGRIGQMPAWKDILGEQGVKEVVSYTLS-LSGRSV- 238

Query: 230 EGAKADVENGQKIFAANCVACHGPEGKGTPAMGAPNLTHPQAFIYGSSFAQLQQTIRYGR 289
             AK + E G+  FA  C ACHG +GKG PA GAPNLT    +++G S A++ +T+  GR
Sbjct: 239 -NAK-EAEAGKARFAV-CSACHGTDGKGNPAFGAPNLT-DNDWLFGDSRAEVTETVMNGR 294

Query: 290 QGQMPAQEQLQGNDKVHLLAAYVYSLSH 317
            G MPA     G +K+ L+AAYV+SLS+
Sbjct: 295 SGVMPAWINTLGEEKIQLVAAYVWSLSN 322



 Score = 63.5 bits (153), Expect = 7e-15
 Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 3/85 (3%)

Query: 239 GQKIFAANCVACHGPEGKGTPAMGAPNLTHPQAFIYGSSFAQLQQTIRYGRQGQMPAQEQ 298
           GQ++F  NC  CHG + +G    G PNLT   A++YG     +  TIR+GR GQMPA + 
Sbjct: 160 GQRLFLQNCSQCHGSDARGQK--GFPNLTD-DAWLYGGEPQAIVTTIRHGRIGQMPAWKD 216

Query: 299 LQGNDKVHLLAAYVYSLSHQAEPAK 323
           + G   V  + +Y  SLS ++  AK
Sbjct: 217 ILGEQGVKEVVSYTLSLSGRSVNAK 241