Pairwise Alignments

Query, 325 a.a., cytochrome c oxidase subunit, cbb3-type from Pseudomonas putida KT2440

Subject, 323 a.a., cytochrome c oxidase, cbb3-type, subunit III (RefSeq) from Shewanella loihica PV-4

 Score =  279 bits (713), Expect = 8e-80
 Identities = 151/328 (46%), Positives = 208/328 (63%), Gaps = 16/328 (4%)

Query: 1   MTTFWSLYVTVLTLGTIFSLTWLLLSTRKGQREEVTDETVGHAFDGIEEYDNPLPQWWFW 60
           M++FWS+++TVLT+  I     LL    K        +++GH+FDGIEE +NPLP+WW +
Sbjct: 2   MSSFWSIWITVLTIVVIAGCFILLFVVSKNTTGVEEGKSMGHSFDGIEEINNPLPKWWSY 61

Query: 61  LFVGTIVFALGYLVLYPGLGNWKGVLPGYSYLDNDKQTEFSNGQPGWTGV------HEW- 113
           +F  TI+F + YL  YPGLGN+KG L G+S  +    TE    +     V      H W 
Sbjct: 62  MFYITIIFGVVYLAAYPGLGNYKGFL-GWSSSNQSIGTEKGIKEDSAAAVELAANEHRWV 120

Query: 114 --EKEMAKADARFGPIFAKFAAMPIEEVAKDPQALKMGARLFASNCSVCHGSDAKGAFGF 171
             ++E+ KA+A++ PIFA + A P+EE+ K+ +ALK+G RLF  NC+ CHGSDA+G+ GF
Sbjct: 121 QYDQEVEKANAKYSPIFAAYLATPLEELVKNEEALKVGGRLFLQNCAQCHGSDARGSKGF 180

Query: 172 PNLTDNDWRWGGEPETIKTTIMAGRHGVMPAWAEV-IGDQGVADVAAFVVSKLDGRTLPE 230
           PNLTD DW +GG+  TIKTTIM GR+G+MP    + I D  +  +A +VV KL GR   E
Sbjct: 181 PNLTDGDWLYGGDLATIKTTIMNGRNGMMPPKGGLPIEDSELKGLAEYVV-KLSGRDHDE 239

Query: 231 GAKADVENGQKIFAANCVACHGPEGKGTPAMGAPNLTHPQAFIYGSSFAQLQQTIRYGRQ 290
              A    GQ  F   C ACHG +G G   MGAPNLT    ++YG S   +Q++I+ GR 
Sbjct: 240 ALAA---QGQASFMKGCFACHGMDGTGNKFMGAPNLT-DNTWLYGGSRGVIQESIKNGRS 295

Query: 291 GQMPAQEQLQGNDKVHLLAAYVYSLSHQ 318
           G MPA + + G +KVH++AAYVYSLS++
Sbjct: 296 GVMPAWKDVLGEEKVHVIAAYVYSLSNK 323