Pairwise Alignments

Query, 313 a.a., cytochrome c oxidase subunit, cbb3-type from Pseudomonas putida KT2440

Subject, 322 a.a., cytochrome c oxidase, cbb3-type, subunit III (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  286 bits (732), Expect = 5e-82
 Identities = 152/330 (46%), Positives = 206/330 (62%), Gaps = 38/330 (11%)

Query: 1   MTTFWSTYISVLTIGSLIGLTWLLLATRKGQSNNTTDETMGHSFDGIEEYDNPLPKWWFW 60
           M++FWS +ISVL++  + G   LL    K  ++    E+MGHSFDGIEE +NPLPKWW +
Sbjct: 1   MSSFWSIWISVLSLIVIAGCFLLLRVCSKNTTDVKEGESMGHSFDGIEELNNPLPKWWSY 60

Query: 61  LFVGTLAFSVGYLILYPGLGNWKGILPGYENGWTGANE---------------------- 98
           +F  T+ F + YL L+PGLGN+KG+L      WT +N+                      
Sbjct: 61  MFYITIVFGLVYLALFPGLGNYKGLL-----NWTSSNQSIGTGQGIKADSAAAVELAAKE 115

Query: 99  -----WQKEMDKADARFGPIFAKYAAMPVEEVAKDPQALKMGSRLFASNCSVCHGSDAKG 153
                + +E+  A+ ++GPIFA Y A P+EE+ K+ +ALK+G RLF  NC+ CHGSDA+G
Sbjct: 116 GQYVQYDQEVKHANEKYGPIFAAYLATPLEELVKNQEALKVGGRLFLQNCAQCHGSDARG 175

Query: 154 AFGFPNLTDNDWRWGGDPETIKTSIMSGRHGVMPAWAEV-IGDQGVADVAAFVVSKLDGR 212
           + GFPNLTD+DW +GGD  TIKT+IM GRHG+MP    + I D  +A +A +VV KL GR
Sbjct: 176 SKGFPNLTDSDWLYGGDLATIKTTIMGGRHGMMPPKGGLPIDDSEIAGLAEYVV-KLSGR 234

Query: 213 TLPEGAKADVENGQKIFAANCVACHGPEGKGTPAMGAPNLTHPQAFIYGSSFAQLQQTIR 272
              E   A    GQ  F   C ACHG + KG   MGAPNLT    ++YG S   +++TI+
Sbjct: 235 EHDEKLAA---QGQGSFMKGCFACHGMDAKGNKLMGAPNLT-DDVWVYGGSRGVIEETIK 290

Query: 273 YGRQGQMPAQAEIQGNDKVHLLAAYVYSLS 302
           +GR G MPA  ++ G +KVH++AAYVYSLS
Sbjct: 291 HGRTGVMPAWKDVLGEEKVHVIAAYVYSLS 320