Pairwise Alignments

Query, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

Subject, 170 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

 Score = 62.8 bits (151), Expect = 3e-15
 Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 3/135 (2%)

Query: 34  GCRSRAEDVVQDAFFRLSTAPQITSSFKAQLSYLFQIVRNLAIDHYRKQAMELKYSGSEE 93
           GC   A D+ QD F R+     +    +   +YL  +   L +DH+R+  +E  Y   E 
Sbjct: 32  GCAESAADLAQDTFCRILRRENL-EGLREPRAYLTTVAHGLVVDHWRRLEIERAYL--EA 88

Query: 94  EGMNVVVQNASPEATHINRAALNDIAEALNELPPRTRYAFEMYRLNGVPQKDIAKELGVS 153
                     SPE   +   AL +I   L  LP + R AF + +L+G+  ++I + LGVS
Sbjct: 89  LAWQPEALAPSPEERALVLEALLEIEALLAALPEKVRQAFLLAQLDGLGYQEIGERLGVS 148

Query: 154 PTLVNFMIRDALVHC 168
             +V   +  A++HC
Sbjct: 149 ERMVKKYMARAMLHC 163