Pairwise Alignments

Query, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

Subject, 197 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

 Score = 68.9 bits (167), Expect = 5e-17
 Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 7/139 (5%)

Query: 39  AEDVVQDAFFRLSTAPQITSSFKAQLSYLFQIVRNLAIDHYRKQAME-----LKYSGSEE 93
           AED++QD FF L  A ++    +   ++LF++ R+  +D +RK+  E     ++  G EE
Sbjct: 49  AEDILQDVFFELVEAWRLPEPIEQVGAWLFRVARHRIVDRFRKRREEPLPVAVQEDGDEE 108

Query: 94  EGMNVVV--QNASPEATHINRAALNDIAEALNELPPRTRYAFEMYRLNGVPQKDIAKELG 151
             +   +   +  PEA ++ R  L+ IA AL EL P  R  F  + ++G   K++A E G
Sbjct: 109 HWLEAALPADDGGPEAAYLRRLWLDAIATALEELAPGPRETFIAHEIDGRSFKEMAAESG 168

Query: 152 VSPTLVNFMIRDALVHCRK 170
           V    +    R A++H R+
Sbjct: 169 VPMNTLLGWKRQAVLHLRQ 187