Pairwise Alignments

Query, 643 a.a., Sensor histidine kinase/response regulator from Pseudomonas putida KT2440

Subject, 1765 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  245 bits (625), Expect = 1e-68
 Identities = 144/396 (36%), Positives = 225/396 (56%), Gaps = 11/396 (2%)

Query: 231  NNLASALEQASD--EQKQAIAELIQAREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQ 288
            N   SA+    D  E K    EL+ A++EA+ A++AK DFLA MSHE+RTPMN ++GM Q
Sbjct: 1004 NQFESAVVSMVDMTELKLLSDELLVAKDEADAASKAKGDFLANMSHEIRTPMNAIIGMSQ 1063

Query: 289  LLETTPLSSEQADYTAVASESTGHLLKVINDILDFSRIERAALQLEHIDFNLGELITNSV 348
            L   T L  +Q +Y      ++  LL +INDILDFS+IE   L +E++ F L  ++ +  
Sbjct: 1064 LCLQTQLDKKQKNYLEKIERASQSLLSIINDILDFSKIEAGKLDIENVSFQLDTMLEDLS 1123

Query: 349  QSFQHSAQQRGLGLHLQLPAGIEQLQVNGDPTRIRQILLNLIGNALKFTERGQVQVDARW 408
              F   A Q+ + L   +   + +  + GDP R+ Q+L+NL+ NA+KFTERG+V +    
Sbjct: 1124 DMFSERAAQKQIELLFAVAPNVPR-HLLGDPLRLGQVLINLMNNAIKFTERGEVLLSLSL 1182

Query: 409  QVLDRQLIWLTCSVRDTGIGIDSDRLEMMFVAFQQADSSISRRYGGTGLGLSIARTLAER 468
                   + L  SVRD+GIG+  ++   +F +F QAD+S +R+YGGTGLGL+I++ L E 
Sbjct: 1183 VEQQNDDVVLRFSVRDSGIGLTQEQQSKLFKSFTQADTSTTRKYGGTGLGLAISKQLVEL 1242

Query: 469  MGGKLRGESREGLGSTFTLEMPLALANPAPVPLTPPTTVRTTVPDNDQVLLVEDNPVNRS 528
            MGG +  ES+ G GSTF   + L +++   + +           D   +L+ +DN   R 
Sbjct: 1243 MGGSIGVESQLGHGSTFFFTVKLCISSGQKLFVGQEL-------DGMSILVADDNATARD 1295

Query: 529  VVEAMLRSLGLAVCTAEDGLEAVELVGRQRFAAVLMDCRLPHLDGYEATRRIRQLPNGAG 588
            ++   L S+G  V T   G EA+    +Q +A  L+D ++P+LDG E  ++I+Q    A 
Sbjct: 1296 IMRTTLESMGFNVDTVRSGDEAIMRCSQQEYAVALIDWKMPNLDGIETAKQIKQQTKNAP 1355

Query: 589  LPIIALTANALQGDRERCMAAGMDDYLSKPLRRTEL 624
              I+ ++A+A Q    +    G+  Y+SKP+  + L
Sbjct: 1356 -RILMVSAHANQDFLTQIEQLGLAGYISKPISASRL 1390



 Score =  112 bits (279), Expect = 2e-28
 Identities = 53/117 (45%), Positives = 81/117 (69%)

Query: 516  QVLLVEDNPVNRSVVEAMLRSLGLAVCTAEDGLEAVELVGRQRFAAVLMDCRLPHLDGYE 575
            ++LLVEDN +N  V    L  +G+ +  A +G  A++ + +Q F  VLMDC++P +DGY+
Sbjct: 1425 RILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLAQQSFDLVLMDCQMPVMDGYQ 1484

Query: 576  ATRRIRQLPNGAGLPIIALTANALQGDRERCMAAGMDDYLSKPLRRTELQQVLQRWL 632
            AT+ IRQ P  A LP+IA+TANA+ GD+E C+ AGM+D+++KP+    L Q L ++L
Sbjct: 1485 ATKAIRQRPELAQLPVIAMTANAMAGDKEMCLRAGMNDHIAKPIEVNLLYQTLLKYL 1541