Pairwise Alignments

Query, 643 a.a., Sensor histidine kinase/response regulator from Pseudomonas putida KT2440

Subject, 1188 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  247 bits (630), Expect = 3e-69
 Identities = 147/379 (38%), Positives = 222/379 (58%), Gaps = 11/379 (2%)

Query: 251  LIQAREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTPLSSEQADYTAVASEST 310
            L++A+++AE AN  KS+FLA MSHE+RTPMN ++GMLQL + T L+++Q DY   A  S 
Sbjct: 660  LLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTAQQKDYLEKAGFSA 719

Query: 311  GHLLKVINDILDFSRIERAALQLEHIDFNLGELITNSVQSFQHSAQQRGLGLHLQLPAGI 370
              LL++INDILDFS+IE   L+LE + F L +++ +++      AQ++G+ L L  P   
Sbjct: 720  QSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPV-T 778

Query: 371  EQLQVNGDPTRIRQILLNLIGNALKFTERGQVQVDARWQVLDRQLIWLTCSVRDTGIGID 430
              L + GDP R+ Q+L+NL+ NA+KFT+ G++++           I L   VRDTGIGI 
Sbjct: 779  AGLILKGDPLRLGQVLINLLSNAVKFTQSGEIELGCEDVGERDHRITLKFWVRDTGIGIS 838

Query: 431  SDRLEMMFVAFQQADSSISRRYGGTGLGLSIARTLAERMGGKLRGESREGLGSTFTLEMP 490
             D+ E +F AF QAD S +R+YGGTGLGLSI++ L   MGGK++ +S  G+GSTF+  + 
Sbjct: 839  KDQQEKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTIS 898

Query: 491  LALANPAPV-PLTPPTTVRTTVPDNDQVLLVEDNPVNRSVVEAMLRSLGLAVCTAEDGLE 549
              +A  A + PL  P  +     +N + L+V+DNP    +  A++R     V TA  G E
Sbjct: 899  FEIAEEAKIEPLVVPEKL-----NNLRTLVVDDNPTALQIYSALMRDFHFEVDTAASGAE 953

Query: 550  AVELVGRQRFAAVLMDCRLPHLDGYEATRRIRQLPNGAGLP----IIALTANALQGDRER 605
            A+  + R     +L+D  +P +DG +    I  +     +     II +TA A +     
Sbjct: 954  ALYKLSRDPIDLLLLDWMMPEMDGSDVISAIDTMVAEGRIAKRPIIIMMTAYAAEPLLHE 1013

Query: 606  CMAAGMDDYLSKPLRRTEL 624
              +A +   L KP + + L
Sbjct: 1014 VDSANVFAVLQKPFKASSL 1032



 Score =  102 bits (253), Expect = 1e-25
 Identities = 52/116 (44%), Positives = 79/116 (68%)

Query: 517  VLLVEDNPVNRSVVEAMLRSLGLAVCTAEDGLEAVELVGRQRFAAVLMDCRLPHLDGYEA 576
            VLLVEDN +N+ V   +L+S G  V  A +G  A+++V  + F AVLMD ++P +DG  A
Sbjct: 1066 VLLVEDNFINQQVATELLKSAGYEVVVAGNGQIALDIVDSRPFDAVLMDIQMPVMDGLTA 1125

Query: 577  TRRIRQLPNGAGLPIIALTANALQGDRERCMAAGMDDYLSKPLRRTELQQVLQRWL 632
             R +R+  +   LPIIA+TA+A+ GDRE+ +AAGM+ +++KP+  TEL + L  W+
Sbjct: 1126 ARALRERYSADVLPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLTELFETLTHWI 1181