Pairwise Alignments

Query, 884 a.a., sensor protein from Pseudomonas putida KT2440

Subject, 856 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  120 bits (300), Expect = 5e-31
 Identities = 90/264 (34%), Positives = 145/264 (54%), Gaps = 16/264 (6%)

Query: 618 LLTALGQPLAQALARARLAEQLEAARLHGETEQLRSALLASVSHDLRTPLTAMRGSIDSL 677
           LL    Q  AQ +A+ R++  L         EQ+++  +++VSH+LRTPLT++ G++  +
Sbjct: 462 LLRGYIQRDAQGMAQ-RISGTLMDLTERKRVEQMKNDFVSTVSHELRTPLTSISGALGLI 520

Query: 678 L--ALGDAIPAEDRRELLEGTRNEAERLDRYIQNLLDMTRLGHGGLKLARDWVAPADIVG 735
           +  ALG A PA   +++LE     + RL   I +LLDM ++  G +       +  D++ 
Sbjct: 521 VGGALGSA-PAS-MQQMLEIAYRNSLRLGHLINDLLDMEKIAAGKMSFELREHSLGDLLE 578

Query: 736 SAL--NRLRVVLAPLRVHTDVPTELPLLFVHAALIEQALVNVLENAARFSPANGRLELQV 793
            +L  N+       +R   D P ++ L++V    ++Q L N L NA +F+P  G + L  
Sbjct: 579 ESLASNQALCEQHGIRCSLDHPVDV-LVWVDGMRLQQVLGNFLSNAVKFTPQGGEIRLHS 637

Query: 794 AVHDDQLRLTVSDQGPGIPEADREKIFDMFYTAARGD-RGGQGTGLGLAICQGMIGAHGG 852
           ++   ++R++V+DQGPGIPEA R ++F+ F  A   D R   GTGLGLAI + +I   GG
Sbjct: 638 SLRGPRVRISVTDQGPGIPEAFRSRVFEKFAQADASDSRQKSGTGLGLAITKELIERMGG 697

Query: 853 QILVGEGID---GQGTSITLCLPL 873
            +    G D   GQGT+    LP+
Sbjct: 698 TV----GFDCPPGQGTTFWCELPI 717