Pairwise Alignments

Query, 884 a.a., sensor protein from Pseudomonas putida KT2440

Subject, 994 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  113 bits (283), Expect = 5e-29
 Identities = 86/256 (33%), Positives = 128/256 (50%), Gaps = 10/256 (3%)

Query: 631 ARARLAEQLEAARLHGETEQLRSALLASVSHDLRTPLTAMRGSIDSLLALGDAIPAEDRR 690
           A A LA   E  R   E ++L++   A++SH+LRTPLT + G +   LA  D  PA   R
Sbjct: 197 ANAELARLYEKTR---ELDELKTQFFANISHELRTPLTLILGPVGKHLADPDLAPA--LR 251

Query: 691 ELLEGTRNEAERLDRYIQNLLDMTRLGHGGLKLARDWVAPADIVGSALNRLRVVLAPLRV 750
             LE     A  L R++ +LLD+ +L  G + +       A +     +    +    RV
Sbjct: 252 RDLEVVERNARMLYRHVNDLLDVAKLEAGRMVMHYTEGDLAHLTRVIASHFDSLAEGRRV 311

Query: 751 HTDVPTELPLLF-VHAALIEQALVNVLENAARFSPANGRLELQVAVHDDQLRLTVSDQGP 809
              V T   L   V A   ++ L+N+L NA +F+   G ++L++     Q R+ V D GP
Sbjct: 312 RYVVTTPPDLTAQVDAEKYQRILLNLLSNAFKFAGDGGAIQLRLTAAGGQARIEVEDNGP 371

Query: 810 GIPEADREKIFDMFYTAARG-DRGGQGTGLGLAICQGMIGAHGGQILVGEGIDGQGTSIT 868
           GIPEA RE++F+ F     G  R   GTGLGLAI + +   HGG + + +     G   T
Sbjct: 372 GIPEAMREQVFEPFRQVEGGSSRHHGGTGLGLAIVRELAQLHGGSVRI-DAAPSSGALFT 430

Query: 869 LCLPL--PPQPEAESE 882
           L LPL  PP  + +++
Sbjct: 431 LELPLLAPPGTQLQAQ 446



 Score = 72.0 bits (175), Expect = 2e-16
 Identities = 79/260 (30%), Positives = 116/260 (44%), Gaps = 19/260 (7%)

Query: 634 RLAEQLEAARLHGETEQLRSA------LLASVSHDLRTPLTAMRGSIDSLLA-LGDAIPA 686
           RL   LE  R+   T +LR+A         +VSHDLR PL A+ G   +++   G A+PA
Sbjct: 736 RLNADLER-RVEERTAELRAANRELDSFAHAVSHDLRAPLRAITGFSRAIIEDHGTALPA 794

Query: 687 EDRRELLEGTRNEAERLDRYIQNLLDMTRLGHGGLKLARDWVAPADIVGSALNRLRVVLA 746
           E  RE L+      +++   I+ LL ++R      +L RD +  + +    L  L     
Sbjct: 795 E-AREFLDHIIASGQQMGALIEGLLTLSRSSRE--ELRRDDIDLSALARRILEELARSEP 851

Query: 747 PLRVHTDVPTELPLLFVHAALIEQALVNVLENAARFS--PANGRLELQVAVHDDQLRLTV 804
             RV   V   L +      +I   L N+L NA +++   A   + +     + Q++  +
Sbjct: 852 GHRVAWQVEDGL-VARGDIRMIGVVLRNLLGNAWKYTARTAAPLIRVHARRQEKQIQFCI 910

Query: 805 SDQGPGIPEADREKIFDMFYTAARGDRGGQGTGLGLAICQGMIGAHGGQILVGEGIDGQG 864
           +D G G   A   K+F  F    R D    G G+GLA  Q ++  HGG I    G  G G
Sbjct: 911 ADNGAGFDMAQVGKLFQPFQRLHRQDE-FPGIGIGLATVQRVVHRHGGSI-EARGEAGHG 968

Query: 865 TSITLCLPLP---PQPEAES 881
            S    LPLP   P P A S
Sbjct: 969 ASFCFTLPLPENEPAPPAPS 988