Pairwise Alignments

Query, 534 a.a., microcin C transporter - ATP binding subunit from Pseudomonas putida KT2440

Subject, 530 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  674 bits (1738), Expect = 0.0
 Identities = 359/524 (68%), Positives = 423/524 (80%), Gaps = 6/524 (1%)

Query: 5   NLIEVRDLAVEFVTGDQVNRVVDGVSFDIRKGETLALVGESGSGKSVTAHSILRLLPYPL 64
           NLIE+RDL+V F   DQ   VV  +  DIR GE LALVGESGSGKSVTAHSIL+LLP   
Sbjct: 10  NLIEIRDLSVAF--NDQT--VVRNLCLDIRPGECLALVGESGSGKSVTAHSILQLLPENE 65

Query: 65  ARHPSGSIRYEGKDLLQQSEKTLQRIRGNRIAMIFQEPMTSLNPLHCIEKQINEILLLHK 124
           A H SGSIRY G++L+    + L+ +RGNRIAMIFQEPMTSLNPLH +EKQI E L+LHK
Sbjct: 66  A-HTSGSIRYRGQELVGADTQALRELRGNRIAMIFQEPMTSLNPLHSVEKQIGETLMLHK 124

Query: 125 GLTGKEATARTLELLDMVGIPEPRKRLKALPHELSGGQRQRVMIAMALANEPELLIADEP 184
           GL GK A  R LELL +VGI  P +RLKA PH+LSGGQRQRV+IAMALA EPELLIADEP
Sbjct: 125 GLGGKAARQRILELLTLVGIQNPVERLKAYPHQLSGGQRQRVIIAMALACEPELLIADEP 184

Query: 185 TTALDVTVQLKILELLKELQARMGMALLLISHDLNLVRRIAHRVCVMQRGQIVEQAECAT 244
           TTALDVTVQ KIL LLK LQ R+GM+LLLISHDLNLVR IA RVCVM+ G+IVEQA C T
Sbjct: 185 TTALDVTVQRKILLLLKSLQQRLGMSLLLISHDLNLVRSIAQRVCVMKAGEIVEQAPCET 244

Query: 245 LFSSPQHHYTQMLINAEPSGLPAHNPVGAPLLEVDDLKVWFPIKKGFLQRTVDHVKAVDG 304
           LFS+P+H Y+  L++AEP G          +L+V DL+V FP+  G  +R  ++++AVDG
Sbjct: 245 LFSAPKHPYSCELLHAEPEGEALPRDDREEVLQVQDLRVSFPLSGGLFRRK-EYLRAVDG 303

Query: 305 VNFSLPQGQTLGIVGESGSGKSTLGLAILRLISSQGGIRFHGQNLEGLNQKAVRPLRREM 364
           ++ S+ +G+TLGIVGESGSGKSTLG AILRLI S+G IRF GQ L+ L+QKA+RP R++M
Sbjct: 304 ISLSIQRGKTLGIVGESGSGKSTLGQAILRLIESEGSIRFQGQALDHLSQKALRPWRKQM 363

Query: 365 QVVFQDPFGSLSPRMCVADIVGEGLRIHRIGTAQEQEAAIIAALEEVGLDPRTRHRYPHE 424
           QVVFQDPFGSLSPRM V  I+ EGL +H+  + ++ EA +I AL+EVGLDP TRHRYPHE
Sbjct: 364 QVVFQDPFGSLSPRMSVQQIISEGLEVHQPSSPEQCEARVIQALKEVGLDPATRHRYPHE 423

Query: 425 FSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQRQVVELLRNLQQKYNLTYLFISHD 484
           FSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQ+QVV LLR LQQKY+LTYLFISHD
Sbjct: 424 FSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQKQVVALLRQLQQKYDLTYLFISHD 483

Query: 485 LAVVKALSHQLMVIKHGHVVEQGDAQAIFHAPQHPYTRQLLEAA 528
           LAVV+AL+H ++VIK G VVEQG +  +F +PQHPYT++LL AA
Sbjct: 484 LAVVRALAHDMIVIKDGKVVEQGASHDVFDSPQHPYTKELLAAA 527



 Score =  188 bits (478), Expect = 4e-52
 Identities = 110/268 (41%), Positives = 168/268 (62%), Gaps = 17/268 (6%)

Query: 4   QNLIEVRDLAVEFVTGD------QVNRVVDGVSFDIRKGETLALVGESGSGKSVTAHSIL 57
           + +++V+DL V F          +  R VDG+S  I++G+TL +VGESGSGKS    +IL
Sbjct: 273 EEVLQVQDLRVSFPLSGGLFRRKEYLRAVDGISLSIQRGKTLGIVGESGSGKSTLGQAIL 332

Query: 58  RLLPYPLARHPSGSIRYEGKDLLQQSEKTLQRIRGNRIAMIFQEPMTSLNPLHCIEKQIN 117
           RL+         GSIR++G+ L   S+K L+  R  ++ ++FQ+P  SL+P   +++ I+
Sbjct: 333 RLI------ESEGSIRFQGQALDHLSQKALRPWR-KQMQVVFQDPFGSLSPRMSVQQIIS 385

Query: 118 EILLLHKGLTGKEATARTLELLDMVGI-PEPRKRLKALPHELSGGQRQRVMIAMALANEP 176
           E L +H+  + ++  AR ++ L  VG+ P  R R    PHE SGGQRQR+ IA AL  +P
Sbjct: 386 EGLEVHQPSSPEQCEARVIQALKEVGLDPATRHRY---PHEFSGGQRQRIAIARALVLKP 442

Query: 177 ELLIADEPTTALDVTVQLKILELLKELQARMGMALLLISHDLNLVRRIAHRVCVMQRGQI 236
            L++ DEPT+ALD TVQ +++ LL++LQ +  +  L ISHDL +VR +AH + V++ G++
Sbjct: 443 ALILLDEPTSALDRTVQKQVVALLRQLQQKYDLTYLFISHDLAVVRALAHDMIVIKDGKV 502

Query: 237 VEQAECATLFSSPQHHYTQMLINAEPSG 264
           VEQ     +F SPQH YT+ L+ A   G
Sbjct: 503 VEQGASHDVFDSPQHPYTKELLAAAHPG 530