Pairwise Alignments

Query, 339 a.a., putative inner membrane ABC transporter permease protein from Pseudomonas putida KT2440

Subject, 322 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  140 bits (354), Expect = 3e-38
 Identities = 93/266 (34%), Positives = 132/266 (49%), Gaps = 21/266 (7%)

Query: 94  LWAPI-----PFSYQSINYDLRVPAPAPPSADN----WLGTDDQGRDVLARVIYGFRISV 144
           L+AP+     PF+  S+N      AP  P+A      WLGTDDQGRDV + ++YG RIS+
Sbjct: 55  LFAPLIAPYDPFNPASLNLMNGFSAPMTPNAFTGDTFWLGTDDQGRDVFSTILYGMRISL 114

Query: 145 LFALTLTVASSIVGVIAGALQGFYGGWVDLAGQRFLEIWSGLPVLYLLIILASFV----- 199
                  + +  +GV  G + G+ GGWV+    R  ++    P + + +++         
Sbjct: 115 FVGFAAVLFAMTLGVTLGLIAGYVGGWVETIIMRVADVQLTFPAILVAMLIFGIAKGITP 174

Query: 200 -----QPNFWWLLGIMLLFSWMSLVDVVRAEFLRGRNLEYVRAARALGMRNGAIMYRHIL 254
                Q   W L+  + L  W+    VVR   L  +N EYV+AAR +G  +GAIM RHIL
Sbjct: 175 VEYRDQMAIWVLILAIGLSDWVQFARVVRGATLVEKNKEYVQAARLIGRGSGAIMLRHIL 234

Query: 255 PNAMISTMTFMPFILTGAIGTLTALDFLGFGLPAGSPSLGELVAQGKSNL-QAPWLGISA 313
           PN +   +      L  AI     L FLG G P   PSLG L+  G+  L    W  +  
Sbjct: 235 PNVLSPVLVIATISLALAIIAEATLSFLGVGAPPTQPSLGTLIRIGQGFLFSGEWWILFF 294

Query: 314 FAVLALMLSLLV-FIGESARDAFDPR 338
            AV  L+L+L V  +G+  RDA +PR
Sbjct: 295 PAVTLLVLALSVNLLGDWLRDALNPR 320